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BibTeX source
@Misc{Pesquita:Semi-AutomatedAnnotationOf:2013,
  author       = {Catia Pesquita, João D. Ferreira, Francisco M.
                 Couto, M{\'a}rio J. Silva},
  title        = {Semi-Automated Annotation of Epidemiological
                 Resources},
  titleaddon   = {},
  howpublished = {Poster @ Epiwork International Workshop "Digital
                 Epidemiology"},
  address      = {Turin, Italy},
  project      = {EPIWORK},
  publisher    = {},
  url          = {},
  docname      = {},
  year         = {2013},
  keywords     = {},
  poster       = {},
}

BibTeX source
@InProceedings{Grego:LASIGEUsingConditional:2013,
  author       = {Tiago Grego and Francisco Pinto and Francisco
                 Couto},
  title        = {LASIGE: using Conditional Random Fields and ChEBI
                 ontology},
  booktitle    = {Proceedings of the International Workshop on
                 Semantic Evaluation (SemEval2013)},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {FiBRE,EPIWORK},
  bibdate      = {2013-05-22},
}

BibTeX source
@InProceedings{Gomes.etal:SearchThePast:2013,
  author       = {Daniel Gomes and David Cruz and João Miranda and
                 Miguel Costa and Simão Fontes},
  title        = {Search the Past with the Portuguese Web Archive},
  booktitle    = {Proceedings of the Demos Track of the 22nd
                 International World Wide Web Conference},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {Rio de Janeiro, Brazil},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-05-15},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Costa.etal:ASurveyOf:2013,
  author       = {Miguel Costa and Daniel Gomes and Francisco M
                 Couto and M{\'a}rio J. Silva},
  title        = {A Survey of Web Archive Search Architectures},
  booktitle    = {Proceedings of the 3rd Temporal Web Analytics
                 Workshop},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {Rio de Janeiro, Brazil},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-05-15},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Gomes.etal:CreatingABillion-Scale:2013,
  author       = {Daniel Gomes and Miguel Costa and David Cruz and
                 João Miranda and Simão Fontes},
  title        = {Creating a Billion-Scale Searchable Web Archive},
  booktitle    = {Proceedings of the 3rd Temporal Web Analytics
                 Workshop},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {May},
  address      = {Rio de Janeiro, Brazil},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-05-15},
  document     = {},
  presentation = {},
}

BibTeX source
@Article{Grego.etal:EnhancementOfChemical:2013,
  author       = {Tiago Grego and Francisco Couto},
  title        = {Enhancement of Chemical Entity Identification in
                 Text Using Semantic Similarity Validation},
  titleaddon   = {},
  journal      = {PLOS ONE},
  volume       = {8},
  number       = {5},
  year         = {2013},
  pages        = {e62984},
  keywords     = {},
  url          = {},
  project      = {FiBRE,EPIWORK},
  bibdate      = {2013-05-07},
}

BibTeX source
@Article{Ferreira.etal:OnTheUsefulness:2012,
  author       = {João Ferreira and Daniela Paolotti and Francisco
                 Couto and M{\'a}rio J. Silva},
  title        = {On the usefulness of ontologies in epidemiologic
                 research and practice},
  titleaddon   = {},
  journal      = {Journal of Epidemiology and Community Health},
  volume       = {},
  number       = {},
  year         = {2012},
  pages        = {},
  keywords     = {},
  url          = {},
  project      = {EPIWORK},
  bibdate      = {2013-03-21},
}

BibTeX source
@TechReport{Teixeira.etal:AutomatedIdentificationAnd:2013,
  author       = {Ana L. Teixeira and João P. Leal and Andre O.
                 Falcao},
  title        = {Automated Identification and Classification of
                 Stereochemistry: Chirality and Double Bond
                 Stereoisomerism},
  institution  = {LaSIGE, Department of Informatics, Faculty of
                 Sciences, University of Lisbon},
  year         = {2013},
  month        = {February},
  url          = {},
  optnumber    = {},
  optnote      = {},
  project      = {ASSUME},
  bibdate      = {2013-02-27},
  document     = {},
}

BibTeX source
@InProceedings{Goncalves.etal:VAMD:2012,
  author       = {Tiago Goncalves and Ana Paula Afonso and Bruno
                 Martins},
  title        = {Visual Analysis of Mobility Data},
  booktitle    = {International Conference on Mobile Data Management},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {(accepted)},
  optproject   = {},
  projet       = {sinteligis},
  bibdate      = {2012-07-30},
}

BibTeX source
@Article{Teixeira.etal:RandomForestsFor:2013,
  author       = {Ana L. Teixeira and João P Leal and Andre O
                 Falcao},
  title        = {Random forests for feature selection in QSPR
                 Models - an application for predicting standard
                 enthalpy of formation of hydrocarbons},
  titleaddon   = {},
  journal      = {Journal of Cheminformatics},
  volume       = {5},
  number       = {9},
  year         = {2013},
  url          = {},
  doi          = {10.1186/1758-2946-5-9},
  project      = {ThermInfo, ASSUME},
  bibdate      = {2013-02-11},
}

BibTeX source
@InProceedings{Falcao.etal:B3InfoAn:2013,
  author       = {Andre O Falcao and Luis Pinheiro and Ana L.
                 Teixeira},
  title        = {B3Info -- An information system for molecular
                 Blood-Brain Barrier penetration data (as a
                 poster)},
  booktitle    = {Beating the Blood-Brain and other Blood Barriers},
  editor       = {},
  address      = {Lisbon, Portugal},
  year         = {2013},
  page         = {57},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {ASSUME},
  bibdate      = {2013-02-07},
  document     = {},
}

BibTeX source
@InProceedings{Teixeira.etal:ImprovingBloodBrain:2013,
  author       = {Ana L. Teixeira and Andre O Falcao},
  title        = {Improving Blood Brain Barrier Penetration in
                 silico Models with a Hybrid Approach for
                 Descriptor Selection (as a poster)},
  booktitle    = {Beating the Blood-Brain and other Blood Barriers},
  editor       = {},
  address      = {Lisbon, Portugal},
  year         = {2013},
  page         = {40},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {ASSUME},
  bibdate      = {2013-02-07},
  document     = {},
}

BibTeX source
@InProceedings{Machado.etal:EnrichmentAnalysisApplied:2012,
  author       = {Catia M. Machado and Ana T. Freitas and Francisco
                 Couto},
  title        = {Enrichment analysis applied to disease prognosis},
  booktitle    = {4th Workshop on Ontologies in Biomedicine and Life
                 Sciences (OBML)},
  editor       = {M. Boeker, H. Herre, R. Hoehndorf, F. Loebe},
  year         = {2012},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {September},
  address      = {},
  url          = {},
  optnote      = {},
  project      = {HCM},
  bibdate      = {2012-07-27},
}

BibTeX source
@TechReport{Teixeira:ThermInfoCollecting:2013,
  author       = {Ana L. Teixeira and Rui C. Santos and João P.
                 Leal and Jos{\'e} A. Martinho Simões and Andre
                 O. Falcao},
  title        = {ThermInfo: Collecting, Retrieving, and Estimating
                 Reliable Thermochemical Data},
  institution  = {LaSIGE, Department of Informatics, Faculty of
                 Sciences, University of Lisbon},
  year         = {2013},
  month        = {January},
  url          = {},
  optnumber    = {},
  optnote      = {},
  project      = {ThermInfo},
  bibdate      = {2013-02-06},
  document     = {},
}

BibTeX source
@MastersThesis{Reis:ThermInfo20-:2012,
  author       = {Rony Reis},
  title        = {ThermInfo 2.0 - Estruturação e concretização
                 de um sistema de informação para propriedades
                 qu{\'i}micas},
  month        = {December},
  school       = {Faculty of Sciences of the University of Lisbon},
  year         = {2012},
  opturl       = {},
  optnote      = {},
  project      = {ThermInfo},
  bibdate      = {2013-01-31},
  document     = {},
}

BibTeX source
@InProceedings{Costa.etal:EvaluatingWebArchive:2012,
  author       = {Miguel Costa and M{\'a}rio J. Silva},
  title        = {Evaluating Web Archive Search Systems},
  booktitle    = {Proceedings of the 13th International Conference
                 on Web Information Systems Engineering},
  editor       = {X. Sean Wang and Isabel Cruz and Alex Delis and
                 Guangyan Huang},
  year         = {2012},
  page         = {440--454},
  volume       = {},
  series       = {Lecture Notes in Computer Science},
  publisher    = {Springer Berlin Heidelberg},
  month        = {November},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2012-12-11},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Grego.etal:IdentifyingChemicalEntities:2012,
  author       = {Tiago Grego and Francisco Pinto and Francisco
                 Couto},
  title        = {Identifying Chemical Entities based on ChEBI},
  booktitle    = {Proceedings of ICBO},
  year         = {2012},
  project      = {FiBRE,BOA},
  opturl       = {http://kr-med.org/icbofois2012},
  document     = {},
}

BibTeX source
@Article{Pesquita.etal:PredictingTheExtension:2012,
  author       = {Catia Pesquita and Francisco M. Couto},
  title        = {Predicting the Extension of Biomedical Ontologies},
  titleaddon   = {},
  journal      = {PLOS Computational Biology},
  volume       = {8},
  number       = {9},
  year         = {2012},
  pages        = {e1002630},
  keywords     = {},
  url          = {},
  project      = {EPIWORK},
  bibdate      = {2012-09-20},
}

BibTeX source
@Article{DFaria.MiningGOAnnot:2012,
  author       = {Daniel Faria and Andreas Schlicker and Catia
                 Pesquita and Hugo Bastos and Antonio E N Ferreira
                 and Mario Albrecht and Andre Falcao},
  title        = {Mining GO Annotations for Improving Annotation
                 Consistency},
  titleaddon   = {},
  journal      = {PLoS ONE},
  volume       = {7},
  number       = {7},
  year         = {2012},
  pages        = {e40519},
  keywords     = {},
  url          = {},
  project      = {ASSUME},
  bibdate      = {2012-09-17},
}

BibTeX source
@Article{Martins.etal:BayesianBBB:2012,
  author       = {In{\^e}s Martins and Ana Teixeira and Lu{\'i}s
                 Pinheiro and Andre O. Falcao},
  title        = {A Bayesian approach to in silico blood-brain
                 barrier penetration modeling},
  titleaddon   = {},
  journal      = {Journal of chemical information and modeling},
  volume       = {52},
  number       = {6},
  year         = {2012},
  pages        = {1686-1697},
  keywords     = {    
                 },
  url          = {},
  project      = {ASSUME},
  bibdate      = {2012-09-17},
}

BibTeX source
@Misc{Ferreira.etal:SemanticSimilarityIn:2012,
  author       = {João D. Ferreira and Francisco M. Couto},
  title        = {Semantic Similarity in the Biomedical Domain},
  titleaddon   = {},
  howpublished = {Poster @ Bioinformatics Open Days 2012},
  address      = {Braga, Portugal},
  project      = {EPIWORK},
  publisher    = {},
  url          = {},
  urldate      = {2012-09-09},
  docname      = {},
  year         = {2012},
  keywords     = {},
  bibdate      = {2012-09-09},
  poster       = {},
}

BibTeX source
@InProceedings{Couto.etal:TheEpidemicMarketplace:2012,
  author       = {Francisco M. Couto and João D. Ferreira and João
                 Zamite and Carlos Santos and Tiago Posse and
                 Paulo Graça and Dulce Domingos and M{\'a}rio J.
                 Silva},
  title        = {The Epidemic Marketplace Platform: towards
                 semantic characterization of epidemiological
                 resources using biomedical ontologies},
  booktitle    = {International Conference on Biomedical Ontologies
                 (ICBO)},
  year         = {2012},
  opturl       = {http://kr-med.org/icbofois2012/proceedings/ICBO2012/ICBO2012DemosSingleFiles/ICBO-2012-session8-Couto.pdf},
  project      = {EPIWORK},
  bibdate      = {2012-09-02},
  presentation = {},
}

BibTeX source
@InProceedings{Ferreira:EpidemiologyIntoThe:2012OPTurl,
  title        = {Bringing epidemiology into the Semantic Web},
  author       = {João D. Ferreira and Catia Pesquita and Francisco
                 M. Couto and M{\'a}rio J. Silva},
  booktitle    = {International Conference on Biomedical Ontologies
                 (ICBO)},
  year         = {2012},
  opturl       = {http://kr-med.org/icbofois2012/proceedings/ICBO2012/ICBO2012PapersSingleFiles/ICBO-2012-session1-paper02-ferreira.pdf},
  project      = {EPIWORK},
  bibdate      = {2012-09-02},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Goncalves.etal:OverviewvsDetail:2012,
  author       = {Tiago Goncalves and Ana Paula Afonso and Maria
                 Beatriz Carmo and Paulo Pombinho},
  title        = {Overview "vs" Detail on mobile devices: a struggle
                 for screen space},
  booktitle    = {Proceedings of the 2012 British Computer Society
                 Conference on Human-Computer Interaction, BCS HCI
                 2012},
  editor       = {},
  year         = {2012},
  page         = {233-23},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  projet       = {sinteligis, vismobile},
  bibdate      = {2012-07-30},
}

BibTeX source
@InProceedings{Machado.etal:TowardATranslational:2012,
  author       = {Catia M. Machado and Francisco Couto and Alexandra
                 R. Fernandes and Susana Santos and Ana T. Freitas},
  title        = {Toward a Translational Medicine Approach for
                 Hypertrophic Cardiomyopathy},
  booktitle    = {3rd International Conference on Information
                 Technology in Bio- and Medical Informatics (ITBAM
                 2012)},
  editor       = {},
  year         = {2012},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {Springer-Verlag GmbH Berlin Heidelberg},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  project      = {HCM},
  bibdate      = {2012-07-26},
  document     = {},
}

BibTeX source
@Misc{Santos.etal:ThermInfoCollecting:2011,
  author       = {R.C. Santos and Ana L. Teixeira and J.P. Leal and
                 Andre O. Falcao and J.A. Martinho Simões},
  title        = {ThermInfo: Collecting, Retrieving, and Estimating
                 Reliable Thermochemical Data},
  titleaddon   = {},
  howpublished = {Poster presented at XXII Encontro Nacional da
                 Sociedade Portuguesa de Qu{\'i}mica, Braga, July},
  address      = {},
  publisher    = {},
  url          = {},
  urldate      = {2012-07-18},
  docname      = {},
  year         = {2011},
  keywords     = {},
  opturl       = {},
  bibdate      = {2012-07-18},
  project      = {ThermInfo},
}

BibTeX source
@Article{doi:10.1021ci300124c,
  author       = {Ines Filipa Martins and Ana L. Teixeira and Luis
                 Pinheiro and Andre O. Falcao},
  title        = {A Bayesian Approach to in Silico Blood-Brain
                 Barrier Penetration Modeling},
  titleaddon   = {},
  journal      = {Journal of Chemical Information and Modeling},
  volume       = {52},
  number       = {6},
  year         = {2012},
  pages        = {1686-1697},
  keywords     = {},
  opturl       = {},
  optproject   = {},
  bibdate      = {2012-07-18},
  doi          = {10.1021/ci300124c},
  url          = {},
}

BibTeX source
@InProceedings{Pombinho.etal:LaMDA:2012,
  author       = {Paulo Pombinho and Ana Paula Afonso and Maria
                 Beatriz Carmo},
  title        = {Mixed Environment Adaptive System for Point of
                 Interest Awareness},
  booktitle    = {Workshop on Location Awareness for Mixed and Dual
                 Reality, in conjunction with IUI 2012},
  editor       = {},
  year         = {2012},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  project      = {vismobile, mobilear},
  bibdate      = {2012-03-03},
  document     = {},
}

BibTeX source
@InProceedings{Pombinho.etal:CARR:2012,
  author       = {Paulo Pombinho and Maria Beatriz Carmo and Ana
                 Paula Afonso},
  title        = {Context Aware Point of Interest Adaptive
                 Recommendation},
  booktitle    = {Workshop on Context-Awareness in Retrieval and
                 Recommendation, in conjunction with IUI 2012},
  editor       = {},
  year         = {2012},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  project      = {vismobile},
  bibdate      = {2012-03-03},
  document     = {},
}

BibTeX source
@Article{Grego.etal:ChemicalEntityRecognition:2012,
  author       = {Tiago Grego and Catia Pesquita and Hugo Bastos and
                 Francisco M. Couto},
  title        = {Chemical Entity Recognition and Resolution to
                 ChEBI},
  journal      = {ISRN Bioinformatics},
  volume       = {2012},
  number       = {},
  year         = {2012},
  pages        = {9},
  keywords     = {},
  opturl       = {},
  optproject   = {},
  bibdate      = {2012-03-07},
  project      = {FiBRE},
  document     = {},
}

BibTeX source
@MastersThesis{Goncalves:VisualizacaoDaRelevancia:2011,
  author       = {Tiago Goncalves},
  title        = {Visualização da Relev{\^a}ncia da Informação
                 Geogr{\'a}fica em Aplicações M{\'o}veis},
  month        = {},
  school       = {FCUL},
  year         = {2011},
  opturl       = {},
  optnote      = {},
  project      = {vismobile},
  bibdate      = {2012-02-16},
  document     = {},
}

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