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BibTeX source
@InProceedings{Barros:ULISBOAAtSemEval-2016:2016,
  author       = {Marcia Barros and Andre Lamurias and Goncalo
                 Figueiro and Marta Antunes and Joana Teixeira and
                 Alexandre Pinheiro and Francisco M Couto},
  title        = {ULISBOA at SemEval-2016 Task 12: Extraction of
                 temporal expressions, clinical events and
                 relations using IBEnt},
  booktitle    = {9th International Workshop on Semantic Evaluation
                 (SemEval)},
  editor       = {},
  year         = {2016},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2016-09-09},
  document     = {},
}

BibTeX source
@InProceedings{Goncalves.etal:AFlexibleRecommendation:2016,
  author       = {Diogo Goncalves and Miguel Costa and Francisco M.
                 Couto},
  title        = {A Flexible Recommendation System for Cable},
  booktitle    = {3rd Workshop on Recommendation Systems for
                 Television and online Video (RecSysTV)},
  editor       = {},
  year         = {2016},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2016-09-08},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Goncalves.etal:ALarge-ScaleCharacterization:2016,
  author       = {Diogo Goncalves and Miguel Costa and Francisco M.
                 Couto},
  title        = {A Large-Scale Characterization of User Behaviour
                 in Cable TV},
  booktitle    = {3rd Workshop on Recommendation Systems for
                 Television and online Video (RecSysTV)},
  editor       = {},
  year         = {2016},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2016-09-08},
  document     = {},
  presentation = {},
}

BibTeX source
@Article{Bastos.etal:GRYFUNAWeb:2015,
  author       = {Hugo Bastos and Lisete Sousa and Luka A. Clarke
                 and Francisco M. Couto},
  title        = {GRYFUN: a web application for GO term annotation
                 visualization and analysis in protein sets},
  titleaddon   = {},
  journal      = {PLoS ONE},
  volume       = {3},
  number       = {10},
  year         = {2015},
  pages        = {e0119631},
  keywords     = {},
  opturl       = {},
  optproject   = {BOA},
  bibdate      = {2015-02-04},
}

BibTeX source
@PhdThesis{Costa:InformationSearchIn:2014,
  author       = {Miguel Costa},
  title        = {Information Search in Web Archives},
  school       = {Faculty of Sciences of the University of Lisbon},
  year         = {2014},
  month        = {},
  optkey       = {},
  opttype      = {},
  optaddress   = {},
  opturl       = {},
  optnumber    = {},
  optnote      = {},
  bibdate      = {2014-12-06},
  document     = {},
  presentation = {},
}

BibTeX source
@InProceedings{Costa.etal:LearningTemporal-DependentRanking:2014,
  author       = {Miguel Costa and M{\'a}rio J. Silva and Francisco
                 M Couto},
  title        = {Learning Temporal-Dependent Ranking Models},
  booktitle    = {Proceedings of the 37th international ACM SIGIR
                 conference on Research and Development in
                 Information Retrieval},
  editor       = {},
  year         = {2014},
  page         = {757--766},
  volume       = {},
  series       = {},
  publisher    = {ACM},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-09-03},
  document     = {},
  presentation = {},
}

BibTeX source
@Article{Gomes.etal:TheImportanceOf:2014,
  author       = {Daniel Gomes and Miguel Costa},
  title        = {The Importance of Web Archives for Humanities},
  titleaddon   = {},
  journal      = {International Journal of Humanities and Arts
                 Computing},
  volume       = {8},
  number       = {1},
  year         = {2014},
  pages        = {106-123},
  keywords     = {},
  opturl       = {},
  optproject   = {},
  bibdate      = {2014-09-03},
  document     = {},
}

BibTeX source
@InProceedings{Goncalves.etal:STCvsSMap:2014,
  author       = {Tiago Goncalves and Ana Paula Afonso and Bruno
                 Martins},
  title        = {Visualizing Human Trajectories: Comparing
                 Space-Time Cubes and Static Maps},
  booktitle    = {Proceedings of 28th British HCI Conference, HCI
                 2014 - Sand, Sea and Sky - Holiday HCI (accepted
                 for publication)},
  editor       = {},
  year         = {2014},
  page         = {},
  volume       = {},
  series       = {BCS HCI},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  projet       = {},
  bibdate      = {},
}

BibTeX source
@InProceedings{Faria.etal:TheAgreementmakerlightOntology:2013,
  author       = {Daniel Faria and Catia Pesquita and Emanuel Santos
                 and Matteo Palmonari and Isabel F Cruz and
                 Francisco M Couto},
  title        = {The agreementmakerlight ontology matching system},
  booktitle    = {On the Move to Meaningful Internet Systems: OTM
                 2013 Conferences},
  editor       = {},
  year         = {2013},
  page         = {527--541},
  volume       = {},
  series       = {},
  publisher    = {Springer},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-03-18},
}

BibTeX source
@InProceedings{Pesquita.etal:ToRepairOr:2013,
  author       = {Catia Pesquita and Daniel Faria and Emanuel Santos
                 and Francisco M Couto},
  title        = {To repair or not to repair: reconciling
                 correctness and coherence in ontology reference
                 alignments},
  booktitle    = {Ontology Matching Workshop at ISWC 2013},
  editor       = {},
  year         = {2013},
  page         = {13},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-03-18},
}

BibTeX source
@Article{Pesquita.etal:TheEpidemiologyOntology:2014,
  author       = {Catia Pesquita and João D Ferreira and Francisco
                 M Couto and M{\'a}rio J Silva},
  title        = {The epidemiology ontology: an ontology for the
                 semantic annotation of epidemiological resources},
  titleaddon   = {},
  journal      = {Journal of biomedical semantics},
  volume       = {5},
  number       = {1},
  year         = {2014},
  pages        = {},
  keywords     = {},
  opturl       = {},
  optproject   = {},
  bibdate      = {2014-03-18},
}

BibTeX source
@InProceedings{Goncalves.etal:VisTChallenges:2014,
  author       = {Tiago Goncalves and Ana Paula Afonso and Bruno
                 Martins},
  title        = {Visualization Techniques of Trajectory Data:
                 Challenges and Limitations},
  booktitle    = {Proceedings of the 2nd AGILE PhD School 2013},
  editor       = {},
  year         = {2014},
  page         = {},
  volume       = {1136},
  series       = {CEUR Workshop Proceedings},
  publisher    = {},
  month        = {},
  address      = {http://ceur-ws.org/Vol-1136/paper3.pdf},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  projet       = {},
  bibdate      = {},
}

BibTeX source
@InProceedings{Carilho.etal:PredictingRelevantEvents:2014,
  author       = {Jos{\'e} Carilho and Oliver Schnell and João
                 Martins and Luis Carriço and Carlos Duarte and
                 Francisco Couto and Tiago Guerreiro},
  title        = {Predicting Relevant Events in the Life of a Person
                 with Alzheimer},
  booktitle    = {Bioinformatics Open Days, Universidade do Minho},
  editor       = {},
  year         = {2014},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {Braga, Portugal},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-03-07},
  document     = {},
}

BibTeX source
@InProceedings{Silva.etal:DevelopmentOfA:2014,
  author       = {Lara Silva and Francisco Couto and Helena Manso
                 and Astrid Vicente},
  title        = {Development of a semantic model for
                 Cerebrovascular Accident (CVA) Patients},
  booktitle    = {Bioinformatics Open Days, Universidade do Minho},
  editor       = {},
  year         = {2014},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {Braga, Portugal},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-03-07},
  document     = {},
}

BibTeX source
@InProceedings{Scalable:NatachaPLeitao:2014,
  title        = {LLC-GNUMAP: Scalable, Precise, and High-Coverage
                 Genomics Mapping},
  author       = {Natacha P. Leitão and João Leitão and Francisco
                 Couto},
  booktitle    = {Bioinformatics Open Days, Universidade do Minho},
  editor       = {},
  year         = {2014},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {Braga, Portugal},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-03-07},
  document     = {},
}

BibTeX source
@InProceedings{Lamurias.etal:IdentifyingInteractionsBetween:2014,
  author       = {Andre Lamurias and Francisco Couto},
  title        = {Identifying Interactions Between Chemical Entities
                 in Text},
  booktitle    = {Bioinformatics Open Days, Universidade do Minho},
  editor       = {},
  year         = {2014},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {February},
  address      = {Braga, Portugal},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-03-07},
  document     = {},
}

BibTeX source
@article{marques2013,
  author       = {Marques, AF and Rosset, C. and Rasinmaki, J. and
                 Vacik, H. and Gordon, S. and Nobre, S. and Andre
                 Falcao and Weber, D. and Granitzer, M. and
                 Eriksson, LO},
  title        = {Collaborative development of a semantic wiki on
                 forest management decision support},
  journal      = {Scandinavian Journal of Forest Research},
  volume       = {},
  number       = {},
  pages        = {1-14},
  year         = {2013},
  doi          = {10.1080/02827581.2013.832791},
  url          = {},
  eprint       = {http://www.tandfonline.com/doi/pdf/10.1080/02827581.2013.832791}
                 keywords = {forest management, decision support
                 wiki, knowledge management, Semantic MediaWiki
                 collaboration},
  optproject   = {ForSys},
  bibdate      = {2014-01-05},
}

BibTeX source
@Article{siqueira2014,
  author       = {JM Siqueira and TA Paço and JC Silvestre and FL
                 Santos and Andre Falcao and LS Pereira},
  title        = {Generating fuzzy rules by learning from olive tree
                 transpiration measurement -- An algorithm to
                 automatize Granier sap flow data analysis},
  titleaddon   = {},
  journal      = {Computers and Electronics in Agriculture},
  volume       = {101},
  number       = {},
  year         = {2014},
  pages        = {1-10},
  keywords     = {     
                     },
  url          = {},
  optproject   = {},
  bibdate      = {2014-01-05},
}

BibTeX source
@InProceedings{Batista.etal:ToponymDisambiguationUsing:2012,
  author       = {D. Batista and J. Ferreira and Francisco Couto and
                 M. Silva},
  title        = {Toponym Disambiguation using Ontology-based
                 Semantic Similarity},
  booktitle    = {Computational Processing of the Portuguese
                 Language (PROPOR)},
  editor       = {},
  year         = {2012},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  url          = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-01-03},
}

BibTeX source
@InProceedings{Faria.etal:TheAgreementMakerLightOntology:2013,
  author       = {D. Faria and C. Pesquita and E. Santos and M.
                 Palmonari and I. Cruz and Francisco Couto},
  title        = {The AgreementMakerLight Ontology Matching System},
  booktitle    = {The 12th International Conference on Ontologies
                 DataBases, and Applications of Semantics (ODBASE)},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  url          = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2014-01-03},
}

BibTeX source
@Article{Unknown:TrackingPoliticsWith:2013,
  author       = {S. Moreira and D. Batista and P. Carvalho and
                 Francisco Couto and M. Silva},
  title        = {Tracking Politics with {POWER}},
  titleaddon   = {},
  journal      = {Program: electronic library and information
                 systems},
  volume       = {47},
  number       = {2},
  year         = {2013},
  pages        = {},
  keywords     = {},
  url          = {},
  optproject   = {},
  bibdate      = {2014-01-03},
}

BibTeX source
@Article{Machado.etal:EnrichmentAnalysisApplied:2013,
  author       = {C. Machado and A. Freitas and Francisco Couto},
  title        = {Enrichment analysis applied to disease prognosis},
  titleaddon   = {},
  journal      = {Journal of Biomedical Semantics},
  volume       = {4},
  number       = {21},
  year         = {2013},
  pages        = {},
  keywords     = {},
  url          = {},
  optproject   = {},
  bibdate      = {2014-01-03},
}

BibTeX source
@Article{Couto.etal:TheNextGeneration:2013,
  author       = {Francisco Couto and H. Pinto},
  title        = {The Next Generation of Similarity Measures that
                 fully explore the Semantics in Biomedical
                 Ontologies},
  titleaddon   = {},
  journal      = {Journal of Bioinformatics and Computational
                 Biology},
  volume       = {11},
  number       = {5 (1371001)},
  year         = {2013},
  pages        = {},
  keywords     = {},
  url          = {},
  optproject   = {},
  bibdate      = {2014-01-03},
}

BibTeX source
@Article{Machado.etal:TheSemanticWeb:2013,
  author       = {C. Machado and D. Rebholz-Schuhmann and A. Freitas
                 and Francisco Couto},
  title        = {The semantic web in translational medicine:
                 current applications and future directions},
  titleaddon   = {},
  journal      = {Briefings in Bioinformatics, Oxford Univ Press},
  volume       = {},
  number       = {},
  year         = {2013},
  pages        = {},
  keywords     = {},
  opturl       = {},
  optproject   = {HCM},
  bibdate      = {2014-01-03},
}

BibTeX source
@inproceedings{DBLP:confgrappCarmoCFAS13,
  author       = {Maria Beatriz Carmo and Ana Paula Cl{\'a}udio and
                 Ant{\'o}nio Ferreira and Ana Paula Afonso and
                 Ra{\'u}l Simpl{\'i}cio},
  title        = {Improving Symbol Salience in Augmented Reality.},
  booktitle    = {GRAPP/IVAPP 2013: Proceedings of the International
                 Conference on Computer Graphics Theory and
                 Applications and International Conference on
                 Information Visualization Theory and
                 Applications.},
  editor       = {},
  year         = {2013},
  page         = {367-372},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  optproject   = {mobilear},
  bibdate      = {2013-07-17},
}

BibTeX source
@InProceedings{Pombinho.etal:Understanding:2013,
  author       = {Paulo Pombinho and Ana Paula Afonso and Maria
                 Beatriz Carmo},
  title        = {Understanding the Role of Historical Context in a
                 Point of Interest Recommendation System.},
  booktitle    = {GRAPP/IVAPP 2013: Proceedings of the International
                 Conference on Computer Graphics Theory and
                 Applications and International Conference on
                 Information Visualization Theory and
                 Applications.},
  year         = {2013},
  isbn         = {}, WorldCat | Amazon
  editor       = {},
  year         = {2013},
  page         = {537-541},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {},
  optproject   = {vismobile},
  bibdate      = {2013-07-17},
}

BibTeX source
@InProceedings{Pesquita.etal:WhatsInA:2013,
  author       = {Catia Pesquita and Daniel Faria and Cosmin Stroe
                 and Emanuel Santos and Isabel F Cruz and
                 Francisco M Couto},
  title        = {What's in a 'nym'? Synonyms in Biomedical Ontology
                 Matching},
  booktitle    = {International Semantic Web Conference},
  editor       = {},
  year         = {2013},
  page         = {526-541},
  volume       = {},
  series       = {},
  publisher    = {Springer Berlin Heidelberg},
  month        = {},
  address      = {},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-11-02},
}

BibTeX source
@Inproceedings{Lamurias.etal:ChemicalCompoundAnd:2013,
  author       = {Andre Lamurias and Tiago Grego and Francisco Couto},
  title        = {Chemical compound and drug name recognition using
                 CRFs and semantic similarity based on ChEBI},
  booktitle    = {Proceedings of the fourth BioCreative challenge
                 evaluation workshop},
  year         = {2013},
  bibdate      = {2013-10-07},
  project      = {ICE} document =
                 {Lamurias.etal:ChemicalCompoundAnd:2013\_document.pdf},
  document     = {},
}

BibTeX source
@InProceedings{Costa.etal:QuerySuggestionFor:2013,
  author       = {Miguel Costa and João Miranda and David Cruz and
                 Daniel Gomes},
  title        = {Query Suggestion for Web Archive Search},
  booktitle    = {Proceedings of the 10th International Conference
                 on Preservation of Digital Objects},
  editor       = {},
  year         = {2013},
  page         = {},
  volume       = {},
  series       = {},
  publisher    = {},
  month        = {},
  address      = {Lisbon, Portugal},
  opturl       = {},
  optnote      = {},
  optproject   = {},
  bibdate      = {2013-10-07},
  poster       = {},
  presentation = {},
}

BibTeX source
@Article{Bastos.etal:AnnotationExtensionThrough:2013,
  author       = {Hugo Bastos and Luka A. Clarke and Francisco M.
                 Couto},
  title        = {Annotation extension through protein family
                 annotation coherence metrics},
  titleaddon   = {},
  journal      = {Frontiers in Genetics},
  volume       = {4},
  number       = {201},
  year         = {2013},
  pages        = {},
  keywords     = {},
  url          = {},
  doi          = {10.3389/fgene.2013.00201},
  issn         = {1664-8021},
  opturl       = {http://www.frontiersin.org/bioinformatics\_and\_computational\_biology/10.3389/fgene.2013.00201/abstract},
  optproject   = {BOA, coherenzy},
  bibdate      = {2013-09-25},
  document     = {},
}

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