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@InProceedings{Barros:ULISBOAAtSemEval-2016:2016,
  author       = {Marcia Barros and Andre Lamurias and Goncalo Figueiro and Marta Antunes and Joana Teixeira and Alexandre Pinheiro and Francisco M Couto},
title = {ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt},
booktitle = {9th International Workshop on Semantic Evaluation (SemEval)},
editor = {},
year = {2016},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2016-09-09},
document = {Barros:ULISBOAAtSemEval-2016:2016\_document.pdf},
} @InProceedings{Goncalves.etal:AFlexibleRecommendation:2016, author = {Diogo Goncalves and Miguel Costa and Francisco M. Couto},
title = {A Flexible Recommendation System for Cable},
booktitle = {3rd Workshop on Recommendation Systems for Television and online Video (RecSysTV)},
editor = {},
year = {2016},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2016-09-08},
document = {Goncalves.etal:AFlexibleRecommendation:2016\_document.pdf},
presentation = {Goncalves.etal:AFlexibleRecommendation:2016\_presentation.pdf},
} @InProceedings{Goncalves.etal:ALarge-ScaleCharacterization:2016, author = {Diogo Goncalves and Miguel Costa and Francisco M. Couto},
title = {A Large-Scale Characterization of User Behaviour in Cable TV},
booktitle = {3rd Workshop on Recommendation Systems for Television and online Video (RecSysTV)},
editor = {},
year = {2016},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2016-09-08},
document = {Goncalves.etal:ALarge-ScaleCharacterization:2016\_document.pdf},
presentation = {Goncalves.etal:ALarge-ScaleCharacterization:2016\_presentation.pdf},
} @Article{Bastos.etal:GRYFUNAWeb:2015, author = {Hugo Bastos and Lisete Sousa and Luka A. Clarke and Francisco M. Couto},
title = {GRYFUN: a web application for GO term annotation visualization and analysis in protein sets},
titleaddon = {},
journal = {PLoS ONE},
volume = {3},
number = {10},
year = {2015},
pages = {e0119631},
keywords = {},
opturl = {},
optproject = {BOA},
bibdate = {2015-02-04},
} @PhdThesis{Costa:InformationSearchIn:2014, author = {Miguel Costa},
title = {Information Search in Web Archives},
school = {Faculty of Sciences of the University of Lisbon},
year = {2014},
month = {},
optkey = {},
opttype = {},
optaddress = {},
opturl = {},
optnumber = {},
optnote = {},
bibdate = {2014-12-06},
document = {Costa:InformationSearchIn:2014\_document.pdf},
presentation = {Costa:InformationSearchIn:2014\_presentation.pdf},
} @InProceedings{Costa.etal:LearningTemporal-DependentRanking:2014, author = {Miguel Costa and M{\'a}rio J. Silva and Francisco M Couto},
title = {Learning Temporal-Dependent Ranking Models},
booktitle = {Proceedings of the 37th international ACM SIGIR conference on Research and Development in Information Retrieval},
editor = {},
year = {2014},
page = {757--766},
volume = {},
series = {},
publisher = {ACM},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2014-09-03},
document = {Costa.etal:LearningTemporal-DependentRanking:2014\_document.pdf},
presentation = {Costa.etal:LearningTemporal-DependentRanking:2014\_presentation.pdf},
} @Article{Gomes.etal:TheImportanceOf:2014, author = {Daniel Gomes and Miguel Costa},
title = {The Importance of Web Archives for Humanities},
titleaddon = {},
journal = {International Journal of Humanities and Arts Computing},
volume = {8},
number = {1},
year = {2014},
pages = {106-123},
keywords = {},
opturl = {},
optproject = {},
bibdate = {2014-09-03},
document = {Gomes.etal:TheImportanceOf:2014\_document.pdf},
} @InProceedings{Goncalves.etal:STCvsSMap:2014, author = {Tiago Goncalves and Ana Paula Afonso and Bruno Martins},
title = {Visualizing Human Trajectories: Comparing Space-Time Cubes and Static Maps},
booktitle = {Proceedings of 28th British HCI Conference, HCI 2014 - Sand, Sea and Sky - Holiday HCI (accepted for publication)},
editor = {},
year = {2014},
page = {},
volume = {},
series = {BCS HCI},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
projet = {},
bibdate = {},
} @InProceedings{Faria.etal:TheAgreementmakerlightOntology:2013, author = {Daniel Faria and Catia Pesquita and Emanuel Santos and Matteo Palmonari and Isabel F Cruz and Francisco M Couto},
title = {The agreementmakerlight ontology matching system},
booktitle = {On the Move to Meaningful Internet Systems: OTM 2013 Conferences},
editor = {},
year = {2013},
page = {527--541},
volume = {},
series = {},
publisher = {Springer},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2014-03-18},
} @InProceedings{Pesquita.etal:ToRepairOr:2013, author = {Catia Pesquita and Daniel Faria and Emanuel Santos and Francisco M Couto},
title = {To repair or not to repair: reconciling correctness and coherence in ontology reference alignments},
booktitle = {Ontology Matching Workshop at ISWC 2013},
editor = {},
year = {2013},
page = {13},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2014-03-18},
} @Article{Pesquita.etal:TheEpidemiologyOntology:2014, author = {Catia Pesquita and João D Ferreira and Francisco M Couto and M{\'a}rio J Silva},
title = {The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources},
titleaddon = {},
journal = {Journal of biomedical semantics},
volume = {5},
number = {1},
year = {2014},
pages = {},
keywords = {},
opturl = {},
optproject = {},
bibdate = {2014-03-18},
} @InProceedings{Goncalves.etal:VisTChallenges:2014, author = {Tiago Goncalves and Ana Paula Afonso and Bruno Martins},
title = {Visualization Techniques of Trajectory Data: Challenges and Limitations},
booktitle = {Proceedings of the 2nd AGILE PhD School 2013},
editor = {},
year = {2014},
page = {},
volume = {1136},
series = {CEUR Workshop Proceedings},
publisher = {},
month = {},
address = {http://ceur-ws.org/Vol-1136/paper3.pdf},
opturl = {},
optnote = {},
optproject = {},
projet = {},
bibdate = {},
} @InProceedings{Carilho.etal:PredictingRelevantEvents:2014, author = {Jos{\'e} Carilho and Oliver Schnell and João Martins and Luis Carriço and Carlos Duarte and Francisco Couto and Tiago Guerreiro},
title = {Predicting Relevant Events in the Life of a Person with Alzheimer},
booktitle = {Bioinformatics Open Days, Universidade do Minho},
editor = {},
year = {2014},
page = {},
volume = {},
series = {},
publisher = {},
month = {February},
address = {Braga, Portugal},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2014-03-07},
document = {Carilho.etal:PredictingRelevantEvents:2014\_document.pdf},
} @InProceedings{Silva.etal:DevelopmentOfA:2014, author = {Lara Silva and Francisco Couto and Helena Manso and Astrid Vicente},
title = {Development of a semantic model for Cerebrovascular Accident (CVA) Patients},
booktitle = {Bioinformatics Open Days, Universidade do Minho},
editor = {},
year = {2014},
page = {},
volume = {},
series = {},
publisher = {},
month = {February},
address = {Braga, Portugal},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2014-03-07},
document = {Silva.etal:DevelopmentOfA:2014\_document.pdf},
} @InProceedings{Scalable:NatachaPLeitao:2014, title = {LLC-GNUMAP: Scalable, Precise, and High-Coverage Genomics Mapping},
author = {Natacha P. Leitão and João Leitão and Francisco Couto},
booktitle = {Bioinformatics Open Days, Universidade do Minho},
editor = {},
year = {2014},
page = {},
volume = {},
series = {},
publisher = {},
month = {February},
address = {Braga, Portugal},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2014-03-07},
document = {Scalable:NatachaPLeitao:2014\_document.pdf},
} @InProceedings{Lamurias.etal:IdentifyingInteractionsBetween:2014, author = {Andre Lamurias and Francisco Couto},
title = {Identifying Interactions Between Chemical Entities in Text},
booktitle = {Bioinformatics Open Days, Universidade do Minho},
editor = {},
year = {2014},
page = {},
volume = {},
series = {},
publisher = {},
month = {February},
address = {Braga, Portugal},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2014-03-07},
document = {Lamurias.etal:IdentifyingInteractionsBetween:2014\_document.pdf},
} @article{marques2013, author = {Marques, AF and Rosset, C. and Rasinmaki, J. and Vacik, H. and Gordon, S. and Nobre, S. and Andre Falcao and Weber, D. and Granitzer, M. and Eriksson, LO},
title = {Collaborative development of a semantic wiki on forest management decision support},
journal = {Scandinavian Journal of Forest Research},
volume = {},
number = {},
pages = {1-14},
year = {2013},
doi = {10.1080/02827581.2013.832791},
url = {http://www.tandfonline.com/doi/abs/10.1080/02827581.2013.832791},
eprint = {http://www.tandfonline.com/doi/pdf/10.1080/02827581.2013.832791} keywords = {forest management, decision support, wiki, knowledge management, Semantic MediaWiki, collaboration},
optproject = {ForSys},
bibdate = {2014-01-05},
} @Article{siqueira2014, author = {JM Siqueira and TA Paço and JC Silvestre and FL Santos and Andre Falcao and LS Pereira},
title = {Generating fuzzy rules by learning from olive tree transpiration measurement -- An algorithm to automatize Granier sap flow data analysis},
titleaddon = {},
journal = {Computers and Electronics in Agriculture},
volume = {101},
number = {},
year = {2014},
pages = {1-10},
keywords = {Fuzzy rule; Machine learning; Sap flow measurement; Plant transpiration; Granier method},
url = {http://dx.doi.org/10.1016/j.compag.2013.11.013},
optproject = {},
bibdate = {2014-01-05},
} @InProceedings{Batista.etal:ToponymDisambiguationUsing:2012, author = {D. Batista and J. Ferreira and Francisco Couto and M. Silva},
title = {Toponym Disambiguation using Ontology-based Semantic Similarity},
booktitle = {Computational Processing of the Portuguese Language (PROPOR)},
editor = {},
year = {2012},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
url = {http://dx.doi.org/10.1007/978-3-642-28885-2\_20},
optnote = {},
optproject = {},
bibdate = {2014-01-03},
} @InProceedings{Faria.etal:TheAgreementMakerLightOntology:2013, author = {D. Faria and C. Pesquita and E. Santos and M. Palmonari and I. Cruz and Francisco Couto},
title = {The AgreementMakerLight Ontology Matching System},
booktitle = {The 12th International Conference on Ontologies, DataBases, and Applications of Semantics (ODBASE)},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
url = {http://scholar.google.com/scholar?cluster=11348944698436252059},
optnote = {},
optproject = {},
bibdate = {2014-01-03},
} @Article{Unknown:TrackingPoliticsWith:2013, author = {S. Moreira and D. Batista and P. Carvalho and Francisco Couto and M. Silva},
title = {Tracking Politics with {POWER}},
titleaddon = {},
journal = {Program: electronic library and information systems},
volume = {47},
number = {2},
year = {2013},
pages = {},
keywords = {},
url = {http://dx.doi.org/10.1108/00330331311313708},
optproject = {},
bibdate = {2014-01-03},
} @Article{Machado.etal:EnrichmentAnalysisApplied:2013, author = {C. Machado and A. Freitas and Francisco Couto},
title = {Enrichment analysis applied to disease prognosis},
titleaddon = {},
journal = {Journal of Biomedical Semantics},
volume = {4},
number = {21},
year = {2013},
pages = {},
keywords = {},
url = {http://dx.doi.org/10.1186/2041-1480-4-21},
optproject = {},
bibdate = {2014-01-03},
} @Article{Couto.etal:TheNextGeneration:2013, author = {Francisco Couto and H. Pinto},
title = {The Next Generation of Similarity Measures that fully explore the Semantics in Biomedical Ontologies},
titleaddon = {},
journal = {Journal of Bioinformatics and Computational Biology},
volume = {11},
number = {5 (1371001)},
year = {2013},
pages = {},
keywords = {},
url = {http://dx.doi.org/10.1142/S0219720013710017},
optproject = {},
bibdate = {2014-01-03},
} @Article{Machado.etal:TheSemanticWeb:2013, author = {C. Machado and D. Rebholz-Schuhmann and A. Freitas and Francisco Couto},
title = {The semantic web in translational medicine: current applications and future directions},
titleaddon = {},
journal = {Briefings in Bioinformatics, Oxford Univ Press},
volume = {},
number = {},
year = {2013},
pages = {},
keywords = {},
opturl = {},
optproject = {HCM},
bibdate = {2014-01-03},
} @inproceedings{DBLP:confgrappCarmoCFAS13, author = {Maria Beatriz Carmo and Ana Paula Cl{\'a}udio and Ant{\'o}nio Ferreira and Ana Paula Afonso and Ra{\'u}l Simpl{\'i}cio},
title = {Improving Symbol Salience in Augmented Reality.},
booktitle = {GRAPP/IVAPP 2013: Proceedings of the International Conference on Computer Graphics Theory and Applications and International Conference on Information Visualization Theory and Applications.},
editor = {},
year = {2013},
page = {367-372},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
optproject = {mobilear},
bibdate = {2013-07-17},
} @InProceedings{Pombinho.etal:Understanding:2013, author = {Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {Understanding the Role of Historical Context in a Point of Interest Recommendation System.},
booktitle = {GRAPP/IVAPP 2013: Proceedings of the International Conference on Computer Graphics Theory and Applications and International Conference on Information Visualization Theory and Applications.},
year = {2013},
isbn = {978-989-8565-46-4},
editor = {},
year = {2013},
page = {537-541},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
optproject = {vismobile},
bibdate = {2013-07-17},
} @InProceedings{Pesquita.etal:WhatsInA:2013, author = {Catia Pesquita and Daniel Faria and Cosmin Stroe and Emanuel Santos and Isabel F Cruz and Francisco M Couto},
title = {What's in a 'nym'? Synonyms in Biomedical Ontology Matching},
booktitle = {International Semantic Web Conference},
editor = {},
year = {2013},
page = {526-541},
volume = {},
series = {},
publisher = {Springer Berlin Heidelberg},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2013-11-02},
} @Inproceedings{Lamurias.etal:ChemicalCompoundAnd:2013, author = {Andre Lamurias and Tiago Grego and Francisco Couto},
title = {Chemical compound and drug name recognition using CRFs and semantic similarity based on ChEBI},
booktitle = {Proceedings of the fourth BioCreative challenge evaluation workshop},
year = {2013},
bibdate = {2013-10-07},
project = {ICE} document = {Lamurias.etal:ChemicalCompoundAnd:2013\_document.pdf},
document = {Lamurias.etal:ChemicalCompoundAnd:2013\_document.pdf},
} @InProceedings{Costa.etal:QuerySuggestionFor:2013, author = {Miguel Costa and João Miranda and David Cruz and Daniel Gomes},
title = {Query Suggestion for Web Archive Search},
booktitle = {Proceedings of the 10th International Conference on Preservation of Digital Objects},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {Lisbon, Portugal},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2013-10-07},
poster = {Costa.etal:QuerySuggestionFor:2013\_poster.pdf},
presentation = {Costa.etal:QuerySuggestionFor:2013\_presentation.pdf},
} @Article{Bastos.etal:AnnotationExtensionThrough:2013, author = {Hugo Bastos and Luka A. Clarke and Francisco M. Couto},
title = {Annotation extension through protein family annotation coherence metrics},
titleaddon = {},
journal = {Frontiers in Genetics},
volume = {4},
number = {201},
year = {2013},
pages = {},
keywords = {},
url = {http://www.frontiersin.org/bioinformatics\_and\_computational\_biology/10.3389/fgene.2013.00201/abstract},
doi = {10.3389/fgene.2013.00201},
issn = {1664-8021},
opturl = {http://www.frontiersin.org/bioinformatics\_and\_computational\_biology/10.3389/fgene.2013.00201/abstract},
optproject = {BOA, coherenzy},
bibdate = {2013-09-25},
document = {Bastos.etal:AnnotationExtensionThrough:2013\_document.pdf},
} @Article{Teixeira.etal:ANon-contiguousAtom:, author = {Ana L. Teixeira and Andre O. Falcao},
title = {Noncontiguous atom matching structural similarity function},
titleaddon = {},
journal = {Journal of Chemical Information and Modeling},
volume = {53},
number = {10},
year = {2013},
pages = {2511-2524},
keywords = {cheminformatics, metric spaces, QSAR, QSPR, NAMS},
url = {http://pubs.acs.org/doi/abs/10.1021/ci400324u},
project = {ASSUME, Therminfo},
doi = {10.1021/ci400324u}},
bibdate = {2013-09-19},
} @Article{Ferreira.etal:ExploitingDisjointnessAxioms:, author = {João D Ferreira and Janna Hastings and Francisco M Couto},
title = {Exploiting disjointness axioms to improve semantic similarity measures},
journal = {Oxford Bioinformatics},
journal = {Bioinformatics},
pages = {btt491},
year = {2013},
publisher = {Oxford Univ Press} volume = {},
opturl = {http://bioinformatics.oxfordjournals.org/content/early/2013/09/03/bioinformatics.btt491.abstract},
optproject = {SOMER},
bibdate = {2013-09-09},
document = {Ferreira.etal:ExploitingDisjointnessAxioms:\_document.pdf},
} @InProceedings{Ferreira.etal:DigitalPreservationOf:2013, author = {João D. Ferreira and Catia Pesquita and Francisco M. Couto and M{\'a}rio J. Silva},
title = {Digital preservation of epidemic resources: coupling metadata and ontologies},
booktitle = {Proceedings of the 10th International Conference on Preservation of Digital Objects},
year = {2013},
bibdate = {2013-08-30},
project = {Epiwork},
document = {Ferreira.etal:DigitalPreservationOf:2013\_document.pdf},
} @TechReport{Zamite.etal:D36-Report:2013, author = {João Zamite and João D. Ferreira and Paulo Graça and Carlos Santos and Tiago Posse and C{\'a}tia Pesquita and Dulce Domingos and Francisco Couto and M{\'a}rio J. Silva},
title = {D3.6 - Report: Final Specification of the Epidemic Marketplace Platform and Evaluation Results},
institution = {FCUL},
year = {2013},
month = {July},
opturl = {},
optnumber = {},
optnote = {},
project = {Epiwork},
bibdate = {2013-07-31},
document = {Zamite.etal:D36-Report:2013\_document.pdf},
} @InProceedings{Goncalves.etal:STTrajVis:2013, author = {Tiago Goncalves and Ana Paula Afonso and Bruno Martins and Daniel Gonçalves},
title = {ST-TrajVis: Interacting with Trajectory Data},
booktitle = {Proceedings of the 2013 British Computer Society Conference on Human-Computer Interaction, BCS HCI 2013.},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {(accepted)},
optproject = {},
projet = {sinteligis},
bibdate = {2012-07-30},
} @InProceedings{Zamite:DiscretionaryAccessControl:2013, author = {João Zamite and Dulce Domingos and M{\'a}rio J. Silva and Carlos Santos},
title = {Group-Based Discretionary Access Control for Epidemiological Resources},
optcrossref = {},
optkey = {},
booktitle = {HCist 2013 - International Conference on Health and Social Care Information Systems and Technologies},
optpages = {},
year = {2013},
opteditor = {},
optvolume = {},
optnumber = {},
series = {Procedia Technology},
optaddress = {},
month = {October},
optorganization = {},
publisher = {Elsevier},
optnote = {},
optannote = {},
project = {EPIWORK} document = {Zamite:DiscretionaryAccessControl:2013\_document.pdf},
} @InProceedings{Goncalves.etal:ComparisonOfOff-screen:2013, author = {Tiago Goncalves and Ana Paula Afonso and Maria Beatriz Carmo and Paulo Pombinho},
title = {Comparison of Off-screen Visualization Techniques with Representation of Relevance on Mobile Devices},
booktitle = {Proceedings of the 2013 British Computer Society Conference on Human-Computer Interaction, BCS HCI 2013},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
optproject = {vismobile},
bibdate = {2013-07-17},
} @InProceedings{Teixeira.etal:ImprovingQSPRModels:2013, author = {Ana L. Teixeira and João P. Leal and Andre O Falcao},
title = {Improving QSPR models for predicting standard enthalpy of formation with a hybrid approach for feature selection (as a poster)},
booktitle = {CQB - Day 2013},
editor = {},
year = {2013},
page = {70},
volume = {},
series = {},
publisher = {},
month = {July},
address = {Faculdade de Ci{\^e}ncias da Universidade de Lisboa, Portugal},
url = {http://cqb.fc.ul.pt/download/CQB\_Day\%202013\_AbstractBook.pdf},
optnote = {},
project = {ASSUME, ThermInfo},
bibdate = {2013-07-08},
document = {Teixeira.etal:ImprovingQSPRModels:2013\_document.pdf},
} @Misc{Santos:AccessControlFor:2013, author = {Carlos Santos, Dulce Domingos, João Zamite , Paulo Graça, M{\'a}rio J. Silva},
title = {Access Control for Shared Epidemic Datasets},
titleaddon = {},
howpublished = {Poster @ Epiwork International Workshop "Digital Epidemiology"},
address = {Turin, Italy},
project = {EPIWORK},
publisher = {},
url = {},
docname = {},
year = {2013},
keywords = {},
poster = {Santos:AccessControlFor:2013\_poster.pdf},
} @Misc{Pesquita:Semi-AutomatedAnnotationOf:2013, author = {Catia Pesquita, João D. Ferreira, Francisco M. Couto, M{\'a}rio J. Silva},
title = {Semi-Automated Annotation of Epidemiological Resources},
titleaddon = {},
howpublished = {Poster @ Epiwork International Workshop "Digital Epidemiology"},
address = {Turin, Italy},
project = {EPIWORK},
publisher = {},
url = {},
docname = {},
year = {2013},
keywords = {},
poster = {Pesquita:Semi-AutomatedAnnotationOf:2013\_poster.pdf},
} @InProceedings{Grego:LASIGEUsingConditional:2013, author = {Tiago Grego and Francisco Pinto and Francisco Couto},
title = {LASIGE: using Conditional Random Fields and ChEBI ontology},
booktitle = {Proceedings of the International Workshop on Semantic Evaluation (SemEval2013)},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
url = {http://www.cs.york.ac.uk/semeval-2013/accepted/71\_Paper.pdf},
optnote = {},
project = {FiBRE,EPIWORK},
bibdate = {2013-05-22},
} @InProceedings{Gomes.etal:SearchThePast:2013, author = {Daniel Gomes and David Cruz and João Miranda and Miguel Costa and Simão Fontes},
title = {Search the Past with the Portuguese Web Archive},
booktitle = {Proceedings of the Demos Track of the 22nd International World Wide Web Conference},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {Rio de Janeiro, Brazil},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2013-05-15},
document = {Gomes.etal:SearchThePast:2013\_document.pdf},
presentation = {Gomes.etal:SearchThePast:2013\_presentation.pdf},
} @InProceedings{Costa.etal:ASurveyOf:2013, author = {Miguel Costa and Daniel Gomes and Francisco M Couto and M{\'a}rio J. Silva},
title = {A Survey of Web Archive Search Architectures},
booktitle = {Proceedings of the 3rd Temporal Web Analytics Workshop},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {Rio de Janeiro, Brazil},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2013-05-15},
document = {Costa.etal:ASurveyOf:2013\_document.pdf},
presentation = {Costa.etal:ASurveyOf:2013\_presentation.pdf},
} @InProceedings{Gomes.etal:CreatingABillion-Scale:2013, author = {Daniel Gomes and Miguel Costa and David Cruz and João Miranda and Simão Fontes},
title = {Creating a Billion-Scale Searchable Web Archive},
booktitle = {Proceedings of the 3rd Temporal Web Analytics Workshop},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {May},
address = {Rio de Janeiro, Brazil},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2013-05-15},
document = {Gomes.etal:CreatingABillion-Scale:2013\_document.pdf},
presentation = {Gomes.etal:CreatingABillion-Scale:2013\_presentation.pdf},
} @Article{Grego.etal:EnhancementOfChemical:2013, author = {Tiago Grego and Francisco Couto},
title = {Enhancement of Chemical Entity Identification in Text Using Semantic Similarity Validation},
titleaddon = {},
journal = {PLOS ONE},
volume = {8},
number = {5},
year = {2013},
pages = {e62984},
keywords = {},
url = {http://dx.plos.org/10.1371/journal.pone.0062984},
project = {FiBRE,EPIWORK},
bibdate = {2013-05-07},
} @Article{Ferreira.etal:OnTheUsefulness:2012, author = {João Ferreira and Daniela Paolotti and Francisco Couto and M{\'a}rio J. Silva},
title = {On the usefulness of ontologies in epidemiologic research and practice},
titleaddon = {},
journal = {Journal of Epidemiology and Community Health},
volume = {},
number = {},
year = {2012},
pages = {},
keywords = {},
url = {http://dx.doi.org/10.1136/jech-2012-201142},
project = {EPIWORK},
bibdate = {2013-03-21},
} @TechReport{Teixeira.etal:AutomatedIdentificationAnd:2013, author = {Ana L. Teixeira and João P. Leal and Andre O. Falcao},
title = {Automated Identification and Classification of Stereochemistry: Chirality and Double Bond Stereoisomerism},
institution = {LaSIGE, Department of Informatics, Faculty of Sciences, University of Lisbon},
year = {2013},
month = {February},
url = {http://hdl.handle.net/10455/6894},
optnumber = {},
optnote = {},
project = {ASSUME},
bibdate = {2013-02-27},
document = {Teixeira.etal:AutomatedIdentificationAnd:2013\_document.pdf},
} @InProceedings{Goncalves.etal:VAMD:2012, author = {Tiago Goncalves and Ana Paula Afonso and Bruno Martins},
title = {Visual Analysis of Mobility Data},
booktitle = {International Conference on Mobile Data Management},
editor = {},
year = {2013},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {(accepted)},
optproject = {},
projet = {sinteligis},
bibdate = {2012-07-30},
} @Article{Teixeira.etal:RandomForestsFor:2013, author = {Ana L. Teixeira and João P Leal and Andre O Falcao},
title = {Random forests for feature selection in QSPR Models - an application for predicting standard enthalpy of formation of hydrocarbons},
titleaddon = {},
journal = {Journal of Cheminformatics},
volume = {5},
number = {9},
year = {2013},
url = {http://www.jcheminf.com/content/5/1/9},
doi = {10.1186/1758-2946-5-9},
project = {ThermInfo, ASSUME},
bibdate = {2013-02-11},
} @InProceedings{Falcao.etal:B3InfoAn:2013, author = {Andre O Falcao and Luis Pinheiro and Ana L. Teixeira},
title = {B3Info -- An information system for molecular Blood-Brain Barrier penetration data (as a poster)},
booktitle = {Beating the Blood-Brain and other Blood Barriers},
editor = {},
address = {Lisbon, Portugal},
year = {2013},
page = {57},
volume = {},
series = {},
publisher = {},
month = {February},
address = {},
url = {http://www.beatbarrier.com/},
optnote = {},
project = {ASSUME},
bibdate = {2013-02-07},
document = {Falcao.etal:B3InfoAn:2013\_document.pdf},
} @InProceedings{Teixeira.etal:ImprovingBloodBrain:2013, author = {Ana L. Teixeira and Andre O Falcao},
title = {Improving Blood Brain Barrier Penetration in silico Models with a Hybrid Approach for Descriptor Selection (as a poster)},
booktitle = {Beating the Blood-Brain and other Blood Barriers},
editor = {},
address = {Lisbon, Portugal},
year = {2013},
page = {40},
volume = {},
series = {},
publisher = {},
month = {February},
address = {},
url = {http://www.beatbarrier.com/},
optnote = {},
project = {ASSUME},
bibdate = {2013-02-07},
document = {Teixeira.etal:ImprovingBloodBrain:2013\_document.pdf},
} @InProceedings{Machado.etal:EnrichmentAnalysisApplied:2012, author = {Catia M. Machado and Ana T. Freitas and Francisco Couto},
title = {Enrichment analysis applied to disease prognosis},
booktitle = {4th Workshop on Ontologies in Biomedicine and Life Sciences (OBML)},
editor = {M. Boeker, H. Herre, R. Hoehndorf, F. Loebe},
year = {2012},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
url = {http://www.onto-med.de/obml/ws2012/obml2012report.pdf#page=17},
optnote = {},
project = {HCM},
bibdate = {2012-07-27},
} @TechReport{Teixeira:ThermInfoCollecting:2013, author = {Ana L. Teixeira and Rui C. Santos and João P. Leal and Jos{\'e} A. Martinho Simões and Andre O. Falcao},
title = {ThermInfo: Collecting, Retrieving, and Estimating Reliable Thermochemical Data},
institution = {LaSIGE, Department of Informatics, Faculty of Sciences, University of Lisbon},
year = {2013},
month = {January},
url = {http://hdl.handle.net/10455/6892},
optnumber = {},
optnote = {},
project = {ThermInfo},
bibdate = {2013-02-06},
document = {Teixeira:ThermInfoCollecting:2013\_document.pdf},
} @MastersThesis{Reis:ThermInfo20-:2012, author = {Rony Reis},
title = {ThermInfo 2.0 - Estruturação e concretização de um sistema de informação para propriedades qu{\'i}micas},
month = {December},
school = {Faculty of Sciences of the University of Lisbon},
year = {2012},
opturl = {},
optnote = {},
project = {ThermInfo},
bibdate = {2013-01-31},
document = {Reis:ThermInfo20-:2012\_document.pdf},
} @InProceedings{Costa.etal:EvaluatingWebArchive:2012, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Evaluating Web Archive Search Systems},
booktitle = {Proceedings of the 13th International Conference on Web Information Systems Engineering},
editor = {X. Sean Wang and Isabel Cruz and Alex Delis and Guangyan Huang},
year = {2012},
page = {440--454},
volume = {},
series = {Lecture Notes in Computer Science},
publisher = {Springer Berlin Heidelberg},
month = {November},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2012-12-11},
document = {Costa.etal:EvaluatingWebArchive:2012\_document.pdf},
presentation = {Costa.etal:EvaluatingWebArchive:2012\_presentation.pdf},
} @InProceedings{Grego.etal:IdentifyingChemicalEntities:2012, author = {Tiago Grego and Francisco Pinto and Francisco Couto},
title = {Identifying Chemical Entities based on ChEBI},
booktitle = {Proceedings of ICBO},
year = {2012},
project = {FiBRE,BOA},
opturl = {http://kr-med.org/icbofois2012},
document = {Grego.etal:IdentifyingChemicalEntities:2012\_document.pdf},
} @Article{Pesquita.etal:PredictingTheExtension:2012, author = {Catia Pesquita and Francisco M. Couto},
title = {Predicting the Extension of Biomedical Ontologies},
titleaddon = {},
journal = {PLOS Computational Biology},
volume = {8},
number = {9},
year = {2012},
pages = {e1002630},
keywords = {},
url = {dx.doi.org/10.1371/journal.pcbi.1002630},
project = {EPIWORK},
bibdate = {2012-09-20},
} @Article{DFaria.MiningGOAnnot:2012, author = {Daniel Faria and Andreas Schlicker and Catia Pesquita and Hugo Bastos and Antonio E N Ferreira and Mario Albrecht and Andre Falcao},
title = {Mining GO Annotations for Improving Annotation Consistency},
titleaddon = {},
journal = {PLoS ONE},
volume = {7},
number = {7},
year = {2012},
pages = {e40519},
keywords = {},
url = {http://www.plosone.org/article/info\%3Adoi\%2F10.1371\%2Fjournal.pone.0040519},
project = {ASSUME},
bibdate = {2012-09-17},
} @Article{Martins.etal:BayesianBBB:2012, author = {In{\^e}s Martins and Ana Teixeira and Lu{\'i}s Pinheiro and Andre O. Falcao},
title = {A Bayesian approach to in silico blood-brain barrier penetration modeling},
titleaddon = {},
journal = {Journal of chemical information and modeling},
volume = {52},
number = {6},
year = {2012},
pages = {1686-1697},
keywords = {Bayesian methods, machine learning, blood-brain barrier},
url = {http://pubs.acs.org/doi/abs/10.1021/ci300124c},
project = {ASSUME},
bibdate = {2012-09-17},
} @Misc{Ferreira.etal:SemanticSimilarityIn:2012, author = {João D. Ferreira and Francisco M. Couto},
title = {Semantic Similarity in the Biomedical Domain},
titleaddon = {},
howpublished = {Poster @ Bioinformatics Open Days 2012},
address = {Braga, Portugal},
project = {EPIWORK},
publisher = {},
url = {},
urldate = {2012-09-09},
docname = {},
year = {2012},
keywords = {},
bibdate = {2012-09-09},
poster = {Ferreira.etal:SemanticSimilarityIn:2012\_poster.pdf},
} @InProceedings{Couto.etal:TheEpidemicMarketplace:2012, author = {Francisco M. Couto and João D. Ferreira and João Zamite and Carlos Santos and Tiago Posse and Paulo Graça and Dulce Domingos and M{\'a}rio J. Silva},
title = {The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologies},
booktitle = {International Conference on Biomedical Ontologies (ICBO)},
year = {2012},
opturl = {http://kr-med.org/icbofois2012/proceedings/ICBO2012/ICBO2012DemosSingleFiles/ICBO-2012-session8-Couto.pdf},
project = {EPIWORK},
bibdate = {2012-09-02},
presentation = {Couto.etal:TheEpidemicMarketplace:2012\_presentation.pdf},
} @InProceedings{Ferreira:EpidemiologyIntoThe:2012OPTurl, title = {Bringing epidemiology into the Semantic Web},
author = {João D. Ferreira and Catia Pesquita and Francisco M. Couto and M{\'a}rio J. Silva},
booktitle = {International Conference on Biomedical Ontologies (ICBO)},
year = {2012},
opturl = {http://kr-med.org/icbofois2012/proceedings/ICBO2012/ICBO2012PapersSingleFiles/ICBO-2012-session1-paper02-ferreira.pdf},
project = {EPIWORK},
bibdate = {2012-09-02},
document = {Ferreira:EpidemiologyIntoThe:2012OPTurl\_document.pdf},
presentation = {Ferreira:EpidemiologyIntoThe:2012OPTurl\_presentation.pdf},
} @InProceedings{Goncalves.etal:OverviewvsDetail:2012, author = {Tiago Goncalves and Ana Paula Afonso and Maria Beatriz Carmo and Paulo Pombinho},
title = {Overview "vs" Detail on mobile devices: a struggle for screen space},
booktitle = {Proceedings of the 2012 British Computer Society Conference on Human-Computer Interaction, BCS HCI 2012},
editor = {},
year = {2012},
page = {233-23},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
projet = {sinteligis, vismobile},
bibdate = {2012-07-30},
} @InProceedings{Machado.etal:TowardATranslational:2012, author = {Catia M. Machado and Francisco Couto and Alexandra R. Fernandes and Susana Santos and Ana T. Freitas},
title = {Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy},
booktitle = {3rd International Conference on Information Technology in Bio- and Medical Informatics (ITBAM 2012)},
editor = {},
year = {2012},
page = {},
volume = {},
series = {},
publisher = {Springer-Verlag GmbH Berlin Heidelberg},
month = {},
address = {},
opturl = {},
optnote = {},
project = {HCM},
bibdate = {2012-07-26},
document = {Machado.etal:TowardATranslational:2012\_document.pdf},
} @Misc{Santos.etal:ThermInfoCollecting:2011, author = {R.C. Santos and Ana L. Teixeira and J.P. Leal and Andre O. Falcao and J.A. Martinho Simões},
title = {ThermInfo: Collecting, Retrieving, and Estimating Reliable Thermochemical Data},
titleaddon = {},
howpublished = {Poster presented at XXII Encontro Nacional da Sociedade Portuguesa de Qu{\'i}mica, Braga, July},
address = {},
publisher = {},
url = {http://www.spq.pt/eventos/xxiienspq/},
urldate = {2012-07-18},
docname = {},
year = {2011},
keywords = {},
opturl = {},
bibdate = {2012-07-18},
project = {ThermInfo},
} @Article{doi:10.1021ci300124c, author = {Ines Filipa Martins and Ana L. Teixeira and Luis Pinheiro and Andre O. Falcao},
title = {A Bayesian Approach to in Silico Blood-Brain Barrier Penetration Modeling},
titleaddon = {},
journal = {Journal of Chemical Information and Modeling},
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year = {2012},
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keywords = {},
opturl = {},
optproject = {},
bibdate = {2012-07-18},
doi = {10.1021/ci300124c},
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} @InProceedings{Pombinho.etal:LaMDA:2012, author = {Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {Mixed Environment Adaptive System for Point of Interest Awareness},
booktitle = {Workshop on Location Awareness for Mixed and Dual Reality, in conjunction with IUI 2012},
editor = {},
year = {2012},
page = {},
volume = {},
series = {},
publisher = {},
month = {February},
address = {},
opturl = {},
optnote = {},
optproject = {},
project = {vismobile, mobilear},
bibdate = {2012-03-03},
document = {Pombinho.etal:LaMDA:2012\_document.pdf},
} @InProceedings{Pombinho.etal:CARR:2012, author = {Paulo Pombinho and Maria Beatriz Carmo and Ana Paula Afonso},
title = {Context Aware Point of Interest Adaptive Recommendation},
booktitle = {Workshop on Context-Awareness in Retrieval and Recommendation, in conjunction with IUI 2012},
editor = {},
year = {2012},
page = {},
volume = {},
series = {},
publisher = {},
month = {February},
address = {},
opturl = {},
optnote = {},
optproject = {},
project = {vismobile},
bibdate = {2012-03-03},
document = {Pombinho.etal:CARR:2012\_document.pdf},
} @Article{Grego.etal:ChemicalEntityRecognition:2012, author = {Tiago Grego and Catia Pesquita and Hugo Bastos and Francisco M. Couto},
title = {Chemical Entity Recognition and Resolution to ChEBI},
journal = {ISRN Bioinformatics},
volume = {2012},
number = {},
year = {2012},
pages = {9},
keywords = {},
opturl = {},
optproject = {},
bibdate = {2012-03-07},
project = {FiBRE},
document = {Grego.etal:ChemicalEntityRecognition:2012\_document.pdf},
} @MastersThesis{Goncalves:VisualizacaoDaRelevancia:2011, author = {Tiago Goncalves},
title = {Visualização da Relev{\^a}ncia da Informação Geogr{\'a}fica em Aplicações M{\'o}veis},
month = {},
school = {FCUL},
year = {2011},
opturl = {},
optnote = {},
project = {vismobile},
bibdate = {2012-02-16},
document = {Goncalves:VisualizacaoDaRelevancia:2011\_document.pdf},
} @Misc{Gioannini.etal:IntegratingTheGleamviz:2012, author = {Corrado Gioannini and João Zamite},
title = {Integrating the Gleamviz Simulator Tool with the Epidemic Marketplace Platform},
titleaddon = {},
howpublished = {Poster presented at EE2, Epiwork/Epifor 2nd International Workshop: Facing the Challenge of Infectious Diseases},
address = {},
publisher = {},
url = {http://www.isi.it/events/ee2/},
urldate = {2012-02-11},
docname = {},
year = {2012},
keywords = {Epidemiology, Integration, Epidemic Marketplace},
opturl = {},
bibdate = {2012-01-18},
project = {EPIWORK},
} @Misc{Zamite.etal:EpidemicGroupBasedAccessControl:2012, author = {João Zamite and Dulce Domingos and M{\'a}rio J. Silva},
title = {Owner-Centred Group-Based Access Control for Epidemic Resources},
titleaddon = {},
howpublished = {Poster presented at EE2, Epiwork/Epifor 2nd International Workshop: Facing the Challenge of Infectious Diseases},
address = {},
publisher = {},
url = {http://www.isi.it/events/ee2/},
urldate = {2012-02-11},
docname = {},
year = {2012},
keywords = {Epidemiology, Access Control, Group-Based},
opturl = {},
bibdate = {2012-01-18},
project = {EPIWORK},
poster = {Zamite.etal:EpidemicGroupBasedAccessControl:2012\_poster.pdf},
} @Misc{Ferreira.etal:OntologiesInThe:2012, author = {João D. Ferreira and Francisco M. Couto and M{\'a}rio J. Silva},
title = {Ontologies in the Epidemiological Domain},
titleaddon = {},
howpublished = {Poster presented at EE2, Epiwork/Epifor 2nd International Workshop: Facing the Challenge of Infectious Diseases},
address = {},
publisher = {},
url = {http://www.isi.it/events/ee2/},
urldate = {2012-02-11},
docname = {},
year = {2012},
keywords = {Epidemiology,NERO,ontologies,annotation},
opturl = {},
bibdate = {2012-01-18},
project = {EPIWORK},
poster = {Ferreira.etal:OntologiesInThe:2012\_poster.pdf},
} @TechReport{Ferreira:EpiworkDeliverable35:2012, author = {João D. Ferreira and Catia Pesquita and Francisco Couto and M{\'a}rio J. Silva},
title = {Epiwork Deliverable 3.5: Epidemic Data Ontology},
institution = {University of Lisbon, Faculty of Sciences, LASIGE},
year = {2012},
month = {January},
opturl = {},
optnumber = {},
optnote = {},
project = {EPIWORK},
bibdate = {2012-01-31},
document = {Ferreira:EpiworkDeliverable35:2012\_document.pdf},
} @MastersThesis{Sousa:EpidemicMarketplaceRepositorio:2012, author = {Carla Patr{\'i}cia Freitas Sousa},
title = {Epidemic Marketplace: Reposit{\'o}rio e Web Services},
month = {January},
school = {University of Lisbon, Faculty of Sciences},
year = {2012},
opturl = {},
optnote = {},
bibdate = {2012-01-18},
project = {EPIWORK},
document = {Sousa:EpidemicMarketplaceRepositorio:2012\_document.pdf},
} @Article{zamite2011medcollector, author = {Zamite, J. and Silva, F. and Couto, F. and Silva, M.},
title = {MEDCollector: Multisource epidemic data collector},
journal = {Transactions on Large-scale Data-and Knowledge-centered Systems IV: Special Issue on Database Systems for Biomedical Applications},
volume = {6990},
year = {2011},
publisher = {Springer-Verlag New York Inc},
pages = {40--72},
project = {EPIWORK},
isbn = {ISBN 978-3-642-23739-3},
bibdate = {2012-01-16},
} @MastersThesis{Duque:MediacaoDados-InformacaoDesign:2011, author = {Juliana Duque},
title = {Mediação Dados-Informação: Design de Informação para a Epidemic Marketplace},
month = {November},
school = {University of Lisbon, School of Fine Arts},
year = {2011},
opturl = {},
optnote = {},
project = {EPIWORK},
bibdate = {2011-12-16},
document = {Duque:MediacaoDados-InformacaoDesign:2011\_document.pdf},
presentation = {Duque:MediacaoDados-InformacaoDesign:2011\_presentation.pdf},
} @InProceedings{Cruz.etal:UsingAgreementMakerTo:, author = {Isabel F. Cruz and Cosmin Stroe and Federico Caimi and Alessio Fabiani and Catia Pesquita and Francisco M. Couto and Matteo Palmonari},
title = {Using AgreementMaker to Align Ontologies for OAEI 2011},
booktitle = {Ontology Matching Workshop at the 10th International Semantic Web Conference},
editor = {},
year = {2011},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2011-12-16},
} @InProceedings{gomes2011survey, author = {Daniel Gomes and João Miranda and Miguel Costa},
title = {A survey on web archiving initiatives},
booktitle = {International Conference on Theory and Practice of Digital Libraries 2011},
editor = {},
year = {2011},
page = {408--420},
volume = {},
series = {Research and Advanced Technology for Digital Libraries},
publisher = {},
month = {September},
address = {Berlin},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2011-09-30},
document = {gomes2011survey\_document.[1]},
presentation = {gomes2011survey\_presentation.[1]},
} @Article{Couto.etal:DisjunctiveSharedInformation:2011, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {Disjunctive Shared Information between Ontology Concepts: application to Gene Ontology},
titleaddon = {},
journal = {Journal of Biomedical Semantics},
volume = {2},
number = {5},
year = {2011},
pages = {},
keywords = {},
doi = {doi:10.1186/2041-1480-2-5},
url = {http://www.jbiomedsem.com/content/2/1/5/abstract},
project = {EPIWORK,BOA},
bibdate = {2011-08-31},
} @InProceedings{Duarte:MobiWIS2011:2011, author = {Carlos Duarte and Ana Paula Afonso},
title = {Developing Once, Deploying Everywhere: A Case Study using JIL},
booktitle = {8th International Conference on Mobile Web Information Systems - MobiWIS 2011},
editor = {},
year = {2011},
page = {641-644},
volume = {5},
series = {},
publisher = {Procedia Computer Science},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {vismobile},
bibdate = {2011-07-10},
} @InProceedings{Pombinho.etal:IV2011:2011, author = {Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {Chameleon -- A Context Adaptive Visualization Framework for a Mobile Environment},
booktitle = {Information Visualization - IV2011},
editor = {},
year = {2011},
page = {151-157},
volume = {},
series = {},
publisher = {},
month = {July},
address = {},
opturl = {},
optnote = {},
bibdate = {2011-07-09},
project = {vismobile},
document = {Pombinho.etal:IV2011:2011\_document.pdf},
} @Article{Pombinho.etal:IJCISIM, author = {Paulo Pombinho and Maria Beatriz Carmo and Ana Paula Afonso and Hugo Aguiar},
title = {Location and Orientation Based Queries on Mobile Environments},
titleaddon = {},
journal = {International Journal of Computer Information Systems and Industrial Management Applications},
volume = {3},
number = {},
year = {2011},
pages = {788-795},
keywords = {},
opturl = {},
project = {vismobile, mobilear},
bibdate = {2011-07-09},
document = {Pombinho.etal:IJCISIM\_document.pdf},
} @InProceedings{Silva.etal:RubiAnOpen:2011, author = {Pedro Silva and Paulo Pombinho and Ana Paula Afonso and Tiago Goncalves},
title = {Rubi: An Open Source Android Platform for Mobile Augmented Reality Applications},
booktitle = {Workshop on Mobile Augmented Reality: Design Issues and Opportunities, MobileHCI 11, the 13th International Conference on Human-Computer Interaction with Mobile Devices and Services},
editor = {},
year = {2011},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
optproject = {},
project = {Vismobile, mobilear},
bibdate = {2011-07-04},
} @InProceedings{Goncalves.etal:EvaluationOfHaloDot:2011, author = {Tiago Goncalves and Ana Paula Afonso and Maria Beatriz Carmo and Paulo Pombinho},
title = {Evaluation of HaloDot: Visualization of Relevance of Off-Screen Objects with Over Cluttering Prevention on Mobile Devices},
booktitle = {INTERACT 2011 - 13th IFIP TC13 Conference on Human-Computer Interaction},
editor = {},
year = {2011},
page = {300-308},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
optproject = {},
project = {Vismobile},
bibdate = {2011-07-04},
} @InProceedings{Tiago_Goncalves.etal:HaloDotVisualization:2011, author = {Tiago Goncalves and Ana Paula Afonso and Maria Beatriz Carmo and Paulo Pombinho},
title = {HaloDot: Visualization of the Relevance of Off-Screen Objects},
booktitle = {SIACG 2011, V Simp{\'o}sio Ibero-Americano de Computação Gr{\'a}fica},
editor = {},
year = {2011},
page = {117-120},
volume = {},
series = {},
publisher = {},
month = {June},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2011-07-04},
} @Article{Simoes:MolecularProfilingOf:2011, author = {T. Simões and N. Charro and J. Blonder and Daniel Faria and Francisco Couto and K.C. Chan and T. Waybright and H.J. Isaaq and T.D. Veenstra and D. Penque},
title = {Molecular profiling of the human nasal epithelium: A proteomics approach},
titleaddon = {},
journal = {Journal of Proteomics},
volume = {1},
number = {75},
year = {2011},
pages = {56-69},
keywords = {},
url = {http://dx.doi.org/10.1016/j.jprot.2011.05.012},
project = {ISPD, BOA},
bibdate = {2011-06-17},
} @InProceedings{Cruz.etal:BiomedicalOntologyMatching:2011, author = {Isabel F. Cruz and Cosmin Stroe and Catia Pesquita and Francisco M. Couto and Valerie Cross},
title = {Biomedical Ontology Matching Using the AgreementMaker System},
booktitle = {International Conference on Biomedical Ontologies},
editor = {},
year = {2011},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2011-06-03},
document = {Cruz.etal:BiomedicalOntologyMatching:2011\_document.pdf},
} @InProceedings{Pesquita.etal:WhereGOIs:2011, author = {Catia Pesquita and Francisco Couto},
title = {Where GO is going and what it means for ontology extension},
booktitle = {International Conference on Biomedical Ontologies},
editor = {},
year = {2011},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
project = {EPIWORK,BOA},
bibdate = {2011-06-03},
document = {Pesquita.etal:WhereGOIs:2011\_document.pdf},
} @InProceedings{Tavares.etal:TheBiomedicalOntology:2011, author = {Bruno Tavares and Hugo Bastos and Daniel Faria and Joao D. Ferreira and Tiago Grego and Catia Pesquita and Francisco Couto},
title = {The Biomedical Ontology Applications (BOA) framework},
booktitle = {Proceedings of ICBO},
year = {2011},
opturl = {http://icbo.buffalo.edu/},
project = {EPIWORK,BOA},
bibdate = {2011-06-03},
document = {Tavares.etal:TheBiomedicalOntology:2011\_document.pdf},
} @InProceedings{Ferreira.etal:GenericSemanticRelatedness:2011, author = {João D. Ferreira and Francisco Couto},
title = {Generic semantic relatedness measure for biomedical ontologies},
booktitle = {Proceedings of ICBO},
year = {2011},
opturl = {http://icbo.buffalo.edu/},
project = {EPIWORK,BOA},
bibdate = {2011-06-03},
document = {Ferreira.etal:GenericSemanticRelatedness:2011\_document.pdf},
} @Book{Bastos.etal:InSilicoTools:2011, author = {Hugo Bastos and Bruno Tavares and Catia Pesquita and Daniel Faria and Francisco Couto},
title = {Application of Gene Ontology to Gene Identification},
titleaddon = {In Silico Tools for Gene Discovery: Methods in Molecular Biology},
address = {},
publisher = {Springer},
month = {July},
year = {2011},
keywords = {Gene identification, gene ontology, protein functional annotation, semantic similarity, information content},
opturl = {},
project = {BOA},
isbn = {978-1-61779-175-8},
bibdate = {2011-05-26},
document = {Bastos.etal:InSilicoTools:2011\_document.txt},
} @InProceedings{Bastos.etal:ExploringGeneOntology:2011, author = {Hugo Bastos and Francisco Couto and Pedro M. Coutinho},
title = {Exploring Gene Ontology relationships in Enzyme Families: An application to Polysaccharide Lyases (as a poster)},
booktitle = {9th Carbohydrate Bioengineering Meeting},
editor = {},
year = {2011},
page = {67},
volume = {},
series = {},
publisher = {},
month = {May},
address = {},
opturl = {},
optnote = {},
project = {BOA, coherenzy},
bibdate = {2011-05-26},
document = {Bastos.etal:ExploringGeneOntology:2011\_document.txt},
} @TechReport{Silva.etal:NotasSobreA:2011, author = {M{\'a}rio J. Silva and REACTION TEAM},
title = {Notas sobre a Realização e Qualidade do Twit{\'o}metro},
institution = {University of Lisbon, Faculty of Sciences,LASIGE},
year = {2011},
month = {May},
opturl = {},
optnumber = {},
optnote = {},
project = {REACTION},
bibdate = {2011-05-13},
document = {Silva.etal:NotasSobreA:2011\_document.pdf},
} @InProceedings{Carvalho:LiarsAndSaviors:2011, author = {Paula Carvalho and Lu{\'i}s Sarmento and M{\'a}rio J. Silva and Jorge Teixeira},
title = {Liars and Saviors in a Sentiment Annotated Corpus of Comments to Political Debates},
booktitle = {9th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies (ACL-HTL)},
editor = {},
year = {2011},
page = {},
volume = {},
series = {},
publisher = {},
month = {June},
address = {Portland, Oregon, USA},
opturl = {},
optnote = {},
project = {REACTION},
bibdate = {2011-06-21},
document = {Carvalho:LiarsAndSaviors:2011\_document.pdf},
} @InProceedings{Moreira:POWER-Politics:2011, author = {Silvio Moreira and David Batista and Paula Carvalho and Francisco Couto and M{\'a}rio J. Silva},
title = {POWER - Politics Ontology for Web Entity Retrieval},
booktitle = {ONTOSE 2011: 5th International Workshop on Ontology, Models, Conceptualization and Epistemology in Social, Artificial and Natural Systems},
year = {2011},
pages = {},
keywords = {},
opturl = {},
project = {REACTION},
bibdate = {2011-06-20},
document = {Moreira:POWER-Politics:2011\_document.pdf},
} @InProceedings{Pombinho.etal:PECCS_34:2011, author = {Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {Point of Interest Awareness Using Indoor Positioning with a Mobile Phone},
booktitle = {PECCS 2011 International Conference on Pervasive and Embedded Computing and Communication Systems},
editor = {},
year = {2011},
page = {},
volume = {},
series = {},
publisher = {},
month = {March},
address = {},
opturl = {},
optnote = {},
bibdate = {2011-04-04},
project = {vismobile},
document = {Pombinho.etal:PECCS\_34:2011\_document.pdf},
} @InProceedings{Costa.etal:CharacterizingSearchBehavior:2011, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Characterizing Search Behavior in Web Archives},
booktitle = {Proceedings of the 1st International Temporal Web Analytics Workshop (TWAW 2011)},
editor = {Ricardo Baeza-Yates and Julien Masan{\`e}s and Marc Spaniol},
year = {2011},
page = {33--40},
volume = {707},
series = {CEUR Workshop Proceedings},
publisher = {},
month = {March},
address = {Hyderabad, India},
url = {http://CEUR-WS.org/Vol-707/},
optnote = {},
optproject = {},
bibdate = {2011-03-28},
document = {Costa.etal:CharacterizingSearchBehavior:2011\_document.pdf},
presentation = {Costa.etal:CharacterizingSearchBehavior:2011\_presentation.pdf},
} @MastersThesis{Ferreira:OMediadorDo:2011, author = {Hugo Ferreira},
title = {O Mediador do Epidemic Marketplace},
month = {February},
school = {University of Lisbon, Faculty of Sciences},
year = {2011},
opturl = {},
optnote = {},
bibdate = {2011-02-24},
project = {EPIWORK},
document = {Ferreira:OMediadorDo:2011\_document.pdf},
document = {Ferreira:OMediadorDo:2011\_document.pdf},
} @MastersThesis{Teixeira:ThermInfoSistemaDe:2009, author = {Ana L. Teixeira},
title = {ThermInfo: Sistema de Informação para Coligir e Apresentar Propriedades Termoqu{\'i}micas},
month = {July},
school = {Faculty of Sciences of the University of Lisbon},
year = {2009},
opturl = {},
optnote = {},
project = {ThermInfo},
bibdate = {2009-12-31},
document = {Teixeira:ThermInfoSistemaDe:2009\_document.pdf},
} @InProceedings{Pesquita.etal:BLOOMSOnAgreementMaker:2010, author = {Catia Pesquita and Cosmin Stroe and Isabel F. Cruz and Francisco Couto},
title = {BLOOMS on AgreementMaker: results for OAEI 2010},
booktitle = {ISWC Workshop on Ontology Matching},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
project = {BOA, AEB},
bibdate = {2011-01-21},
} @TechReport{Silva.etal:AutomaticExpansionOf:2010, author = {M{\'a}rio J. Silva and Paula Carvalho and Carlos Costa and Lu{\'i}s Sarmento},
title = {Automatic Expansion of a Social Judgment Lexicon for Sentiment Analysis},
institution = {University of Lisbon, Faculty of Sciences, LASIGE},
year = {2010},
month = {December},
url = {http://hdl.handle.net/10455/6694},
number = {TR 10-08},
project = {REACTION,OPTIMISM,Sentilex},
bibdate = {2010-12-31},
note = {doi: 10455/6694},
} @MastersThesis{Schuenemann:ComputacaoParalelaNa:2010, author = {Hermann Pimentel Schuenemann},
title = {Computação Paralela na Classificação de Prote{\'i}nas sobre a Plataforma CellBE},
month = {Nov},
school = {Universidade de Lisboa - Faculdade de Ci{\^e}ncias - Departamento de Inform{\'a}tica},
year = {2010},
opturl = {},
optnote = {},
project = {Peptides},
bibdate = {2010-11-01},
} @Misc{Falcao:CELPASIM20-:2009, author = {Andre O Falcao},
title = {CELPASIM 2.0 - Manual do Utilizador},
titleaddon = {},
howpublished = {},
address = {},
publisher = {Departamento de Inform{\'a}tica da Faculdade de Ci{\^e}ncias da Universidade de Lisboa},
opturl = {},
opturldate = {},
docname = {},
year = {2009},
keywords = {},
opturl = {},
bibdate = {2009-12-31},
project = {FOGOS},
} @InProceedings{Falcao:DesignOfDecision:2010, author = {Andre O Falcao},
title = {Design of Decision Suport Systems for Industrial Forest Management},
booktitle = {Proceedings of the Workshop em Novas Tecnologias para Gestão Florestal Sustent{\'a}vel},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {Nov},
address = {},
opturl = {http://www.isa.utl.pt/cef/pub/novtec2010/index\_files/Page385.htm},
optnote = {},
optproject = {},
bibdate = {2010-12-27},
project = {FOGOS},
presentation = {Falcao:DesignOfDecision:2010\_presentation.pdf},
} @InProceedings{Falcao.etal:PeptideProgramsApplying:2008, author = {Andre O Falcao and Daniel Faria and Antonio Ferreira},
title = {Peptide programs: applying fragment programs to protein classification},
booktitle = {Proceedings of the CIKM 2008 - DTMBio 2008 Workshop},
editor = {},
year = 2008, page = {},
volume = {},
series = {},
publisher = {},
month = {November},
address = {},
url = {http://web.njit.edu/\widetilde{}song/dtmbio2008/home.html},
optnote = {},
project = {FOGOS, Peptides},
bibdate = {2008-11-01},
presentation = {Falcao.etal:PeptideProgramsApplying:2008\_presentation.pdf},
} @Article{Zhang.etal:ModelingForestCore:, author = {H Zhang and Miguel C Constantino and Andre O Falcao},
title = {Modeling Forest Core Area with Integer Programming},
titleaddon = {},
journal = {Annals of Operations Research},
volume = {},
number = {},
year = {},
pages = {},
note = {DOI:10.1007/s10479\_009\_0517\_4},
keywords = {},
opturl = {},
optproject = {},
bibdate = {2010-12-27},
project = {FOGOS},
} @TechReport{Couto:BenchmarkingSomePortuguese:2009, author = {Francisco Couto and Ivan Andrade and Pedro Gonçalves and Paulo Verissimo},
title = {Benchmarking some Portuguese ST system research units},
institution = {DI FCUL Tecnical Report},
year = {2010},
month = {},
opturl = {http://hdl.handle.net/10455/6682},
optnumber = {07},
optnote = {},
project = {CIDS},
bibdate = {2010-12-20},
} @InProceedings{Cardoso.etal:RevampingQuestionAnswering:, author = {Nuno Cardoso and Iustin Dornescu and Sven Hartrumpf and Johannes Leveling},
title = {Revamping Question Answering with a Semantic Approach over World Knowledge},
booktitle = {Multiple Language Question Answering 2010 (MLQA10), wokshop at CLEF 2010},
editor = {},
year = {},
page = {},
volume = {},
series = {},
publisher = {},
month = {22-23 September},
address = {Padua, Italy},
url = {http://clef2010.org/resources/proceedings/clef2010labs\_submission\_8.pdf},
optnote = {},
optproject = {},
bibdate = {2010-11-20},
document = {Cardoso.etal:RevampingQuestionAnswering:\_document.pdf},
} @InProceedings{Cardoso.etal:ExperimentsWithSemantic-flavored:2010, author = {Nuno Cardoso and M{\'a}rio J. Silva},
title = {Experiments with Semantic-flavored Query Reformulation of Geo-Temporal Queries},
booktitle = {Working Notes of the 8th NTCIR Workshop},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {Juno 15--18},
address = {Tokyo, Japan},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-11-20},
document = {Cardoso.etal:ExperimentsWithSemantic-flavored:2010\_document.pdf},
poster = {Cardoso.etal:ExperimentsWithSemantic-flavored:2010\_poster.pdf},
presentation = {Cardoso.etal:ExperimentsWithSemantic-flavored:2010\_presentation.pdf},
} @InProceedings{Domingos:Ad-hocChangesIn:2010, author = {Dulce Domingos and Francisco Martins and Ricardo Martinho and M{\'a}rio J. Silva},
title = {Ad-hoc Changes in IoT-aware Business Processes},
booktitle = {Proceedings of Internet of Things 2010},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {November},
address = {},
opturl = {},
optnote = {},
project = {PATI},
bibdate = {2010-11-29},
} @InProceedings{Machado.etal:SemanticCharacterizationOf:2010, author = {Catia M. Machado and Francisco Couto and Alexandra R. Fernandes and Susana Santos and Nuno Cardim and Ana T. Freitas},
title = {Semantic Characterization of Hypertrophic Cardiomyopathy Disease},
booktitle = {First Workshop on Knowledge Engineering, Discovery and Dissemination in Health (KEDDH10), held in conjunction with The IEEE International Conference on Bioinformatics \& Biomedicine (BIBM 2010)},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
project = {HCM},
bibdate = {2010-11-15},
document = {Machado.etal:SemanticCharacterizationOf:2010\_document.pdf},
} @TechReport{Silva:EpiworksEpidemicMarketplace:2010, author = {Luis Filipe Lopes, Fabr{\'i}cio A. B. Silva, Francisco Couto, M{\'a}rio Silva},
title = {Epiwork Epidemic Marketplace Metadata Application Profile},
institution = {Lasige - FCUL},
year = {2010},
month = {September},
opturl = {},
optnumber = {},
optnote = {},
optproject = {},
bibdate = {2010-11-08},
document = {Silva:EpiworksEpidemicMarketplace:2010\_document.pdf},
} @TechReport{Silva:D33Public:2010, author = M{\'a}rio J. Silva and Francisco Couto and Dulce Domingos and Juliana Duque and Hugo Ferreira and Lu{\'i}s F. Lopes and Daniela Paolotti and Fabr{\'i}cio Silva and Patr{\'i}cia Sousa and João Zamite, title = {D 3.3 Public Release of the Epidemic Marketplace Platform},
institution = {LASIGE, University of Lisbon, Faculty of Sciences},
year = {2010},
month = {September},
opturl = {},
optnumber = {},
optnote = {},
bibdate = {2010-09-30},
project = {EPIWork},
document = {Silva:D33Public:2010\_document.pdf},
} @MastersThesis{Amoedo:MedidasDeSemielhanca:2010, author = {Daniel Amoedo},
title = {Medidas de Semelhança Sem{\^a}ntica Aplicadas {\`a}s Ontologias Geogr{\'a}ficas},
month = {September},
school = {University of Lisbon, Faculty of Sciences},
year = {2010},
opturl = {},
optnote = {},
bibdate = {2010-09-30},
project = {Grease,GeoSSM},
document = {Amoedo:MedidasDeSemielhanca:2010\_document.pdf},
} @Article{Charro:SerumProteomicsSignature:2010, author = {N. Charro and B.L. Hood and Daniel Faria and P. Pacheco and P. Azevedo and C. Lopes and A. Almeida and Francisco Couto and T.P. Conrads and D. Penque},
title = {Serum proteomics signature of Cystic Fibrosis patients: A complementary 2-DE and LC--MS/MS approach},
titleaddon = {},
journal = {Journal of Proteomics},
volume = {1},
number = {74},
year = {2011},
pages = {110-126},
keywords = {},
opturl = {http://dx.doi.org/10.1016/j.jprot.2010.10.001},
project = {ISPD, BOA},
bibdate = {2010-10-21},
} @MastersThesis{Lopes:AMETADATAMODEL:2010, author = {Luis Filipe Lopes},
title = {A Metadata Model for the Annotation of Epidemiological Data},
month = {September},
school = {University of Lisbon, Faculty of Sciences},
year = {2010},
opturl = {},
optnote = {},
bibdate = {2010-9-19},
project = {EPIWork},
document = {Lopes:AMETADATAMODEL:2010\_document.pdf},
} @MastersThesis{Zamite:MEDCollectorDissertation:2010, author = {João Zamite},
title = {Multisource Epidemic Data Collector},
month = {September},
school = {University of Lisbon, Faculty of Sciences},
year = {2010},
opturl = {},
optnote = {},
project = {EPIWork},
document = {Zamite:MEDCollectorDissertation:2010\_document.pdf},
} @TechReport{Ferreira.etal:TheGeo-Net-PTYahooGeoPlanet:2010, author = {João D. Ferreira and David Batista and Francisco Couto and M{\'a}rio J. Silva},
title = {The Geo-Net-PT/Yahoo! GeoPlanet (TM) concordance},
institution = {University of Lisbon, Faculty of Sciences, LASIGE},
year = {2010},
month = {Setember},
url = {http://hdl.handle.net/10455/6677},
number = {TR 10-05},
bibdate = {2010-10-01},
project = {Grease,geonetpt02},
note = {doi: 10455/6677},
document = {Ferreira.etal:TheGeo-Net-PTYahooGeoPlanet:2010\_document.pdf},
} @InProceedings{costa2010understandingneeds, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Understanding the Information Needs of Web Archive Users},
booktitle = {Proc. of the 10th International Web Archiving Workshop},
editor = {Julien Masan{\`e}s, Andreas Rauber, Marc Spaniol},
year = {2010},
page = {9--16},
volume = {},
series = {},
publisher = {},
month = {September},
address = {Vienna, Austria},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-09-24},
document = {costa2010understandingneeds\_document.pdf},
presentation = {costa2010understandingneeds\_presentation.pdf},
} @Article{Ferreira:SemanticSimilarityFor:2010, author = {João D. Ferreira and Francisco Couto},
title = {Semantic Similarity for Automatic Classification of Chemical Compounds},
journal = {PLoS Computational Biology},
volume = {6},
number = {9},
year = {2010},
pages = {e1000937},
url = {http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000937},
project = {SABO, BOA},
bibdate = {2010-09-23},
} @InProceedings{Batista.etal:AStatisticalStudy:2010, author = {David Batista and M{\'a}rio J. Silva},
title = {A statistical study of the WPT05 crawl of the Portuguese Web},
booktitle = {{FALA 2010 "VI Jornadas en Tecnolog{\'i}a del Habla" and II Iberian SLTech Workshop}},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {11-12 November},
address = {Vigo, Spain},
project = {GREASE,wpt},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-09-23},
document = {Batista.etal:AStatisticalStudy:2010\_document.pdf},
poster = {Batista.etal:AStatisticalStudy:2010\_poster.pdf},
} @InProceedings{Pombinho.etal:IndoorPositioning:2010, author = {Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {Indoor Positioning Using a Mobile Phone with an Integrated Accelerometer and Digital Compass},
booktitle = {2º INForum - Simp{\'o}sio de Inform{\'a}tica},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
bibdate = {2010-09-21},
project = {vismobile},
document = {Pombinho.etal:IndoorPositioning:2010\_document.pdf},
} @InProceedings{costa2010searchLogAnalysis, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {A Search Log Analysis of a {P}ortuguese Web Search Engine},
booktitle = {Proc. of the 2nd INForum - Simp{\'o}sio de Inform{\'a}tica},
editor = {},
year = {2010},
pages = {525--536},
volume = {},
series = {},
publisher = {},
month = {September},
address = {Braga, Portugal},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-09-10},
document = {costa2010searchLogAnalysis\_document.pdf},
presentation = {costa2010searchLogAnalysis\_presentation.pdf},
} @Article{Machado.etal:UnravelingHypertrophicCardiomyopathy:2010, author = {Catia M. Machado and Francisco Couto and Alexandra R. Fernandes and Susana Santos and Nuno Cardim and Ana T. Freitas},
title = {Unraveling Hypertrophic Cardiomyopathy Variability},
titleaddon = {},
journal = {ERCIM News 82 - Special Theme: Computational Biology},
volume = {},
number = {},
year = {2010},
pages = {},
keywords = {},
url = {http://ercim-news.ercim.eu/en82/special/unraveling-hypertrophic-cardiomyopathy-variability},
project = {HCM},
bibdate = {2010-07-13},
} @InProceedings{Pombinho.etal:InfVisMobile:2010, author = {Paulo Pombinho},
title = {Information Visualization on Mobile Environments},
booktitle = {Proceedings of MobileHCI 2010, the 12th International Conference on Human-Computer Interaction with Mobile Devices and Services, Doctoral Consortium},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
bibdate = {2010-07-02},
project = {vismobile},
document = {Pombinho.etal:InfVisMobile:2010\_document.pdf},
} @InProceedings{Pombinho.etal:LocationOrientationSearchInterface:2010, author = {Paulo Pombinho and Maria Beatriz Carmo and Ana Paula Afonso and Hugo Aguiar},
title = {Location and Orientation Based Point of Interest Search Interface},
booktitle = {Proceedings of MobileHCI 2010, the 12th International Conference on Human-Computer Interaction with Mobile Devices and Services},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
bibdate = {2010-07-02},
project = {vismobile, mobilear},
document = {Pombinho.etal:LocationOrientationSearchInterface:2010\_document.pdf},
} @InProceedings{Pombinho.etal:LocationAndOrientation:2010, author = {Paulo Pombinho and Maria Beatriz Carmo and Ana Paula Afonso and Hugo Aguiar},
title = {Location and Orientation Based Queries on Mobile Environments},
booktitle = {Proceedings of the Computer Graphics, Visualization, Computer Vision and Image Processing 2010 International Conference},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {July},
address = {},
opturl = {},
optnote = {},
bibdate = {2010-07-02},
project = {geovis, vismobile},
document = {Pombinho:Location-:2010\_document.pdf},
} @InProceedings{Bessani:MakingHadoopMapReduce:2010, author = {Alysson N. Bessani and Vinicius V. Cogo and Miguel Correia and Pedro Costa and Marcelo Pasin and Fabr{\'i}cio A.B. Silva and Luciana Arantes and Olivier Marin and Pierre Sens and Julien Sopena},
title = {Making Hadoop MapReduce Byzantine Fault-Tolerant},
booktitle = {Proceedings of the The 40th Annual IEEE/IFIP International Conference on Dependable Systems and Networks (DSN 2010)},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-06-25},
project = {FTH-Grid},
} @Article{Silva.etal:EpidemicMarketplaceAn:2010, author = {Fabr{\'i}cio A.B. Silva and M{\'a}rio J. Silva and Francisco Couto},
title = {Epidemic Marketplace: an e-Science Platform for Epidemic Modelling and Analysis},
titleaddon = {},
journal = {ERCIM News},
volume = {},
number = {82},
month = {July},
year = {2010},
pages = {43-44},
keywords = {},
url = {http://ercim-news.ercim.eu/en82/special/epidemic-marketplace-an-e-science-platform-for-epidemic-modelling-and-analysis},
bibdate = {2010-07-01},
project = {EPIWork},
note = {Special Theme: Computational Biology},
} @InProceedings{Pellicer.etal:GeoLinkedData:2010, author = {Francisco J. Lopez-Pellicer and M{\'a}rio J. Silva and Marcirio Chaves and F. Javier Zarazaga-Soria and Pedro R. Muro-Medrano},
title = {Geo Linked Data},
abstract = {Semantic Web applications that include map visualization clients are becoming common. When the description of an entity contains coordinate pairs, semantic applications often lay them as pins on maps provided by Web mapping service applications, such as Google Maps. Nowadays, semantic applications cannot guarantee that those maps provide spatial information related to the entities pinned to them. To address this issue, this paper proposes a refinement of Linked Data practices, named Geo Linked Data, which defines a lightweigth semantic infrastructure to relate URIs that identify real world entities with geospatial Web resources, such as maps},
booktitle = {Proceedings of DEXA 2010},
editor = {},
year = {2010},
page = {495-502},
volume = {6261/2011},
series = {LNCS},
publisher = {Springer},
month = {August},
address = {},
url = {http://dx.doi.org/10.1007/978-3-642-15364-8\_42},
note = {DOI:10.1007/978-3-642-15364-8\_42},
bibdate = {2010-09-01},
project = {Grease},
} @InProceedings{Lopes.etal:EpidemicMarketplaceAn:2010, author = {Luis Filipe Lopes and Fabr{\'i}cio A.B. Silva and Francisco Couto and João Zamite and Hugo Ferreira and Carla Sousa and M{\'a}rio J. Silva},
title = {Epidemic Marketplace: An Information Management System for Epidemiological Data.},
booktitle = {Proceedings of the ITBAM - DEXA 2010},
abstract = {The Epidemic Marketplace is part of a computational framework for organizing data for epidemic modeling and forecasting. It is a distributed data management platform where epidemiological data can be stored, managed and made available to the scientific community. It includes tools for the automatic interaction with other applications through web services, for the collection of epidemiological data from internet social networks and for discussion of related topics. This paper defines its requirements, architecture and implementation plan based on open-source software. This platform will assist epidemiologists and public health scientists in finding, sharing and exchanging data.},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-08-31},
project = {EPIWork},
document = {Lopes.etal:EpidemicMarketplaceAn:2010\_document.pdf},
} @InProceedings{Zamite.etal:MEDCollectorMultisourceEpidemic:2010, author = {João Zamite and Fabr{\'i}cio A.B. Silva and Francisco Couto and M{\'a}rio J. Silva},
title = {MEDCollector: Multisource Epidemic Data Collector},
abstract = {This paper analyzes the requirements and presents a novel approach to the development of a system for epidemiological data collection and integration based on the principles of interoperability and modularity. Accurate and timely epidemic models require the integration of large, fresh datasets. Thus, from an e-science perspective, collected data should be shared seamlessly across multiple applications. This is addressed by our approach, MEDCollector, trough workflow design enables the extraction of data from multiple Web sources. The mapping of extracted entities to ontologies will guarantee the consistency within gathered datasets, and therefore enhance epidemic modeling tools.},
booktitle = {Proceedings of ITBAM'10 - 1st International Conference on Information Technology in Bio- and Medical Informatics - DEXA 2010},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {August},
address = {},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-06-17},
project = {EPIWork},
presentation = {Zamite.etal:MEDCollectorMultisourceEpidemic:2010\_presentation.pdf},
document = {Zamite.etal:MEDCollectorMultisourceEpidemic:2010\_document.pdf},
} @Article{Gomes-Alves.etal:RescueOfF508del-CFTR:2010, author = {Patricia Gomes-Alves and Francisco Couto and Catia Pesquita and AV Coelho and Deborah Penque},
title = {Rescue of F508del-CFTR by RXR motif inactivation triggers proteome modulation associated with the unfolded protein response},
titleaddon = {},
journal = {Biochimica et Biophysica Acta (BBA)-Proteins \& Proteomics},
volume = {1804},
number = {4},
year = {2010},
pages = {856-865},
keywords = {},
opturl = {},
project = {ISPD, BOA},
bibdate = {2010-06-04},
} @InProceedings{Freitas:SecondHAREMAdvancing:2010, author = {Freitas, Cl{\'a}udia, Cristina Mota, Diana Santos, Hugo Gonçalo Oliveira and Paula Carvalho},
title = {Second HAREM: advancing the state of the art of named entity recognition in Portuguese},
booktitle = {In The seventh international conference on Language Resources and Evaluation (LREC 2010)},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {May},
address = {Malta},
opturl = {},
optnote = {},
optproject = {},
bibdate = {2010-04-06},
} @InProceedings{Faria.etal:GOclassesMolecularFunctionAsViewedByProteins, author = {Daniel Faria and Catia Pesquita and Francisco Couto and Andre O Falcao},
title = {GOclasses: molecular function as viewed by proteins},
booktitle = {BioOntologies SIG at ISMB/ECCB - 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {July},
address = {},
opturl = {},
optnote = {},
project = {boa},
bibdate = {2010-03-15},
document = {Faria.etal:GOclassesMolecularFunctionAsViewedByProteins\_document.pdf},
} @TechReport{Grego.etal:CMPSS:2010, author = {Tiago Grego and João D. Ferreira and Catia Pesquita and Hugo Bastos and Diogo Vila Viçosa and João Freire and Francisco Couto},
title = {Chemical and Metabolic Pathway Semantic Similarity},
institution = {University of Lisbon, Faculty of Sciences, LASIGE},
year = {2010},
month = {March},
project = {BOA},
url = {http://hdl.handle.net/10455/3335},
number = {TR 2010-01},
bibdate = {2010-03-08},
} @InProceedings{Silva:ScalabilityAnalysisOf:2010, author = {Fabr{\'i}cio A.B. Silva and Hermes Senger},
title = {Scalability Analysis of Embarrassingly Parallel Applications on Large Clusters},
booktitle = {Proceedings of the 24th IEEE International Parallel and Distributed Processing Symposium, Workshops and Phd Forum},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {IEEE Computer Society},
month = {},
address = {},
opturl = {},
note = {Invited Paper},
bibdate = {2010-04-19},
document = {Silva:ScalabilityAnalysisOf:2010\_document.pdf},
} @InProceedings{Gagliardi:TheIntegra-ModelService:2009, author = {Henrique F. Gagliardi and Fabr{\'i}cio A.B. Silva and Denise Stringhini and Fabio S. Lopes and Ricardo M. Pereira},
title = {The Integra-Model Service: enabling the simulation of multiple epidemiological models and scenarios on the grid},
booktitle = {Proceedings of the the Second EELA-2 Conference},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-11-25},
document = {Gagliardi:TheIntegra-ModelService:2009\_document.pdf},
} @Book{Silva:IntegraEPIEpidemiologicSurveillance:2009, author = {Fabr{\'i}cio A.B. Silva and Henrique F. Gagliardi and Eduardo Gallo and Maria A. Madope and Virg{\'i}lio Cavicchioli Neto and Ivan T. Pisa and Domingos Alves},
title = {IntegraEPI: Epidemiologic Surveillance on the Grid},
titleaddon = {Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare},
address = {},
publisher = {Information Science Reference},
year = {2009},
keywords = {},
opturl = {},
bibdate = {2009-05-01},
document = {Silva:IntegraEPIEpidemiologicSurveillance:2009\_document.pdf},
} @Article{Silva:ImprovingScalabilityOf:2009, author = {Fabr{\'i}cio A.B. Silva and Hermes Senger},
title = {Improving Scalability of Bag-of-Tasks Applications Running on Master-Slave Platforms},
titleaddon = {},
journal = {Parallel Computing},
volume = {2},
number = {35},
year = {2009},
pages = {57-71},
keywords = {},
opturl = {},
bibdate = {2009-02-01},
document = {Silva:ImprovingScalabilityOf:2009\_document.pdf},
} @InProceedings{Anastacio.etal:UsingTheGeographic:2010, author = {Ivo Anast{\'a}cio and Bruno Martins and P{\'a}vel Calado},
title = {Using the Geographic Scopes of Web Documents for Contextual Advertising},
booktitle = {Proceedings of the 6th Workshop on Geographic Information Retrieval},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {18-19 February},
address = {Zurich, Switzerland},
opturl = {},
optnote = {},
bibdate = {2010-02-18},
project = {GREASE},
document = {Anastacio.etal:UsingTheGeographic:2010\_document.pdf},
} @InProceedings{Martins.etal:LearningToRank:2010, author = {Bruno Martins and P{\'a}vel Calado},
title = {Learning to Rank for Geographic Information Retrieval},
booktitle = {Proceedings of the 6th Workshop on Geographic Information Retrieval},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {18-19 February},
address = {Zurich, Switzerland},
opturl = {},
optnote = {},
bibdate = {2010-02-18},
project = {GREASE},
document = {Martins.etal:LearningToRank:2010\_document.pdf},
} @InProceedings{Santos.etal:HowGeographicWas:2010, author = {Diana Santos and Nuno Cardoso and Luis Miguel Cabral},
title = {How geographic was GikiCLEF? A GIR-critical review},
booktitle = {6th Workshop on Geographic Information Retrieval},
editor = {},
year = {2010},
page = {},
url = {},
volume = {},
series = {},
publisher = {},
month = {18-19 February},
address = {Zurich, Switzerland},
optnote = {},
bibdate = {2010-02-18},
project = {GREASE},
document = {Santos.etal:HowGeographicWas:2010\_document.pdf},
} @InProceedings{Batista.etal:GeographicSignaturesSemanticRetrieval:2010, author = {David Batista and M{\'a}rio J. Silva and Francisco Couto and Bibek Behera},
title = {Geographic Signatures for Semantic Retrieval},
booktitle = {6th Workshop on Geographic Information Retrieval},
editor = {},
year = {2010},
page = {},
url = {},
volume = {},
series = {},
publisher = {},
month = {18-19 February},
address = {Zurich, Switzerland},
optnote = {},
bibdate = {2010-02-18},
project = {GREASE,GeoSSM},
document = {C\_document.pdf},
presentation = {Batista.etal:GeographicSignaturesSemanticRetrieval:2010\_presentation.pdf},
} @InProceedings{Lopez-Pellicer.etal:LinkableGeographicOntologies:2010, author = {Francisco J. Lopez-Pellicer and M{\'a}rio J. Silva and Marcirio Chaves},
title = {Linkable Geographic Ontologies},
booktitle = {Proceedings of the 6th Workshop on Geographic Information Retrieval},
editor = {},
year = {2010},
page = {},
volume = {},
series = {},
publisher = {},
month = {18-19 February},
address = {Zurich, Switzerland},
opturl = {},
optnote = {},
bibdate = {2010-02-18},
project = {GREASE, geonetpt02},
document = {Lopez-Pellicer.etal:LinkableGeographicOntologies:2010\_document.pdf},
presentation = {Lopez-Pellicer.etal:LinkableGeographicOntologies:2010\_presentation.ion},
} @InProceedings{Cardoso.etal:AGIRArchitecture:2010, author = {Nuno Cardoso and M{\'a}rio J. Silva},
title = {A GIR Architecture with Semantic-flavored Query Reformulation},
booktitle = {6th Workshop on Geographic Information Retrieval},
editor = {},
year = {2010},
page = {},
url = {},
volume = {},
series = {},
publisher = {},
month = {18-19 February},
address = {Zurich, Switzerland},
optnote = {},
bibdate = {2010-02-18},
project = {GREASE},
document = {Cardoso.etal:AGIRArchitecture:2010\_document.pdf},
presentation = {Cardoso.etal:AGIRArchitecture:2010\_presentation.pdf},
} @InProceedings{Silva.etal:BuildingADigital:2010, author = {M{\'a}rio J. Silva and Fabr{\'i}cio A.B. Silva and Lu{\'i}s Filipe Lopes and Francisco Couto},
title = {Building a Digital Library for Epidemic Modelling},
booktitle = {Proceedings of ICDL 2010 - The International Conference on Digital Libraries},
editor = {},
year = {2010},
page = {447--459},
volume = {1},
series = {},
publisher = {TERI Press -- New Delhi, India},
month = {23--27 February},
address = {New Delhi, India},
opturl = {},
note = {Invited Paper},
project = {EPIWORK},
bibdate = {2010-02-23},
document = {Silva.etal:BuildingADigital:2010\_document.pdf},
presentation = {Silva.etal:BuildingADigital:2010\_presentation.pdf},
} @InBook{Coutinho:Carbohydrate-ActiveEnzymesDatabase:2009, author = {P.M. Coutinho and C. Rancurel and M. Stam and T. Bernard and Francisco Couto and E.G.J. Danchin and B. Henrissat},
title = {Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases},
booktitle = {Bioinformatics for Glycobiology and Glycomics},
publisher = {Wiley},
year = {2009},
month = {},
doi = {10.1002/9780470029619.ch5},
project = {rebil,CoherenZy},
bibdate = {2010-02-01},
} @InProceedings{Pesquita.etal:TakingGOWhere:, author = {Catia Pesquita and Francisco Couto},
title = {Taking GO where we need it to go: focused automated enrichment of the Gene Ontology},
booktitle = {Student Council Symposium at ISMB/ECCB 2009. Stockholm, Sweden},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
project = {aeb,boa},
bibdate = {2009-12-16},
} @InProceedings{Pesquita.etal:CollaborativeEvaluationOf:, author = {Catia Pesquita and Delphine Pessoa and Daniel Faria and Francisco Couto},
title = {Collaborative Evaluation of GO-based Similarity Measures},
booktitle = {The 12th Annual Bio-Ontologies Meeting at ISMB/ECCB 2009},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
project = {boa},
bibdate = {2009-12-16},
poster = {Pesquita.etal:CollaborativeEvaluationOf:\_poster.pdf},
} @InProceedings{Pesquita:CESSMCollaborative:2009, author = {Catia Pesquita and Delphine Pessoa and Daniel Faria and Francisco Couto},
title = {CESSM : Collaborative Evaluation of Semantic Similarity Measures},
booktitle = {JB2009: Challenges in Bioinformatics},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {November},
address = {},
opturl = {},
optnote = {},
project = {boa},
bibdate = {2009-12-11},
document = {Pesquita:CESSMCollaborative:2009\_document.pdf},
} @InProceedings{Bastos:EnzymeFamilyCoherence:2009, author = {Hugo Bastos and Tiago Grego and Francisco Couto and Pedro M. Coutinho},
title = {Enzyme family coherence assessment: validation and prediction},
booktitle = {JB'2009 - Challenges in Bioinformatics},
editor = {},
year = {2009},
page = {26-30},
volume = {},
series = {},
publisher = {},
month = {November},
address = {Lisbon, Portugal},
opturl = {},
optnote = {},
bibdate = {2009-12-02},
project = {coherenzy},
document = {Bastos:EnzymeFamilyCoherence:2009\_document.pdf},
} @InProceedings{Paiva.etal:EstratgiasRepresentaoPI:2009, author = {Bruno Paiva and Ana Paula Cl{\'a}udio and Maria Beatriz Carmo and Paulo Pombinho and Cristina Catita},
title = {Estrat{\'e}gias para a Representação de Pontos de Interesse sobre Mapas},
booktitle = {Actas do 17º Encontro Portugu{\^e}s de Computação Gr{\'a}fica},
editor = {},
year = {2009},
page = {305-306},
volume = {},
series = {},
publisher = {},
month = {October},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-11-06},
project = {geovis, vismobile},
document = {Paiva.etal:EstratgiasRepresentaoPI:2009\_document.pdf},
} @InProceedings{Aguiar.etal:PesquisasOrientao:2009, author = {Hugo Aguiar and Maria Beatriz Carmo and Paulo Pombinho and Ana Paula Afonso},
title = {Pesquisas Baseadas na Localização e na Orientação em Dispositivos M{\'o}veis},
booktitle = {Actas do 17º Encontro Portugu{\^e}s de Computação Gr{\'a}fica},
editor = {},
year = {2009},
page = {269-275},
volume = {},
series = {},
publisher = {},
month = {October},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-11-06},
project = {geovis, vismobile},
document = {Aguiar.etal:PesquisasOrientao:2009\_document.pdf},
} @InProceedings{Pombinho.etal:Contextos:2009, author = {Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {Contextos e Visualização Adaptativa em Ambientes M{\'o}veis},
booktitle = {1º INForum - Simp{\'o}sio de Inform{\'a}tica},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-11-06},
project = {geovis, vismobile},
document = {Pombinho.etal:Contextos:2009\_document.pdf},
} @InProceedings{Pombinho.etal:EvaluationOfOvercluttering:2009, author = {Paulo Pombinho and Maria Beatriz Carmo and Ana Paula Afonso},
title = {Evaluation of Overcluttering Prevention Techniques for Mobile Devices},
booktitle = {Information Visualization (IV2009)},
editor = {},
year = {2009},
page = {127-134},
volume = {},
series = {},
publisher = {},
month = {July},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-11-06},
project = {geovis},
document = {Pombinho.etal:EvaluationOfOvercluttering:2009\_document.pdf},
} @InProceedings{Silva.etal:TheDesignOf:2009, author = {M{\'a}rio J. Silva and Paula Carvalho and Lu{\'i}s Sarmento and Eug{\'e}nio Oliveira and Pedro Magalhães},
title = {The Design of OPTIMISM, an Opinion Mining System for Portuguese Politics},
booktitle = {New Trends in Artificial Intelligence: Proceedings of EPIA 2009 - Fourteenth Portuguese Conference on Artificial Intelligence},
editor = {},
year = {2009},
page = {565-576},
volume = {},
series = {},
publisher = {Universidade de Aveiro},
month = {October},
address = {},
url = {http://epia2009.web.ua.pt/onlineEdition/565.pdf},
optnote = {},
bibdate = {2009-10-15},
project = {OPTIMISM},
document = {Silva.etal:TheDesignOf:2009\_document.pdf},
} @InProceedings{oliveiracardoso09stil, author = {Hugo Gonçalo Oliveira and Nuno Cardoso},
title = {SAHARA: an online service for HAREM Named Entity Recognition Evaluation},
booktitle = {Proceedings of the 7th Brazilian Symposium in Information and Human Language Technology, STIL 2009},
editor = {Thiago A. S. Pardo and Maria das Graças Volpe Nunes},
year = {2009},
month = {8-11th September},
address = {São Carlos, SP, Brazil},
bibdate = {2009-10-14},
document = {},
poster = {oliveiracardoso09stil\_poster.pdf},
} @inproceedings{cardoso09gikiclefposter, author = {Nuno Cardoso},
title = {{GIKICLEF} topics and {W}ikipedia articles: {D}id it blend?},
booktitle = {Poster presented at the {C}ross {L}anguage {E}valuation {F}orum ({CLEF} 2009)},
address = {Corfu, Greece},
month = {30 September - 2 October},
year = 2009, bibdate = {2009-10-14},
project = {GREASE} },
document = {cardoso09gikiclefposter\_document.pdf},
} @inproceedings{cardoso09gikiclef, author = {Nuno Cardoso and David Batista and Francisco J. Lopez-Pellicer and M{\'a}rio J. Silva},
title = {Where in the {W}ikipedia is that answer? The {XLDB} at the {G}iki{CLEF} 2009 task},
booktitle = {{C}ross {L}anguage {E}valuation {F}orum: {W}orking {N}otes for {CLEF} 2009},
address = {Corfu, Greece},
month = {30 September - 2 October},
year = 2009, editor = {Carol Peters and others},
project = {grease},
bibdate = {2009-10-14},
document = {cardoso09gikiclef\_document.pdf},
} @InCollection{cardoso09gikip2008springer, author = {Nuno Cardoso and Patr{\'i}cia Sousa and M{\'a}rio J. Silva},
title = {{E}xperiments with {G}eographic {E}vidence {E}xtracted from {D}ocuments},
year = {2009},
editor = {Peters, Carol and Deselaers, Thomas and Ferro, Nicola and Gonzalo, Julio and Jones, Gareth J.F. and Kurimo, Mikko and Mandl, Thomas and Peñas, Anselmo and Petras, Vivien},
volume = {5706},
series = {LNCS},
publisher = {Springer},
booktitle = {{E}valuating {S}ystems for {M}ultilingual and {M}ultimodal {I}nformation {A}ccess: 9th {W}orkshop of the {C}ross-{L}anguage {E}valuation {F}orum, {CLEF} 2008, {A}arhus, {D}enmark, {S}eptember 17-19, 2008, {R}evised {S}elected {P}apers},
pages = {885-893},
project = {grease},
bibdate = {2009-10-14},
document = {cardoso09gikip2008springer\_document.pdf},
} @InCollection{santos09gikip2008springer, author = {Diana Santos and Nuno Cardoso and Paula Carvalho and Iustin Dornescu and Sven Hartrumpf and Johannes Leveling and Yvonne Skalban},
title = {{G}iki{P} at {G}eo{CLEF} 2008: {J}oining {GIR} and {QA} {F}orces for {Q}uerying {W}ikipedia},
year = {2009},
editor = {Peters, Carol and Deselaers, Thomas and Ferro, Nicola and Gonzalo, Julio and Jones, Gareth J.F. and Kurimo, Mikko and Mandl, Thomas and Peñas, Anselmo and Petras, Vivien},
volume = {5706},
series = {LNCS},
publisher = {Springer},
booktitle = {{E}valuating {S}ystems for {M}ultilingual and {M}ultimodal {I}nformation {A}ccess: 9th {W}orkshop of the {C}ross-{L}anguage {E}valuation {F}orum, {CLEF} 2008, {A}arhus, {D}enmark, {S}eptember 17-19, 2008, {R}evised {S}elected {P}apers},
pages = {894--905},
project = {grease},
bibdate = {2009-10-14},
} @TechReport{Lopez-Pellicer.etal:GeographicOntologiesProduction:2009, author = {Francisco J. Lopez-Pellicer and Marcirio Chaves and Catarina Rodrigues and M{\'a}rio J. Silva},
title = {Geographic Ontologies Production in Grease-II},
institution = {University of Lisbon, Faculty of Sciences, LASIGE},
year = {2009},
month = {November},
project = {grease, geonetpt02},
url = {http://hdl.handle.net/10455/3256},
number = {TR 09-18},
bibdate = {2009-11-30},
note = {doi: 10455/3256},
} @MastersThesis{Batista:ProspeccaoDeConceitos:2009, author = {David Batista},
title = {Prospecção de Conceitos Geogr{\'a}ficos na Web},
month = {September},
school = {University of Lisbon, Faculty of Sciences},
year = {2009},
project = {grease},
opturl = {},
optnote = {},
bibdate = {2009-10-02},
document = {Batista:ProspeccaoDeConceitos:2009\_document.pdf},
presentation = {Batista:ProspeccaoDeConceitos:2009\_presentation.pdf},
} @PhdThesis{Chaves:UmaMetodologiaPara:2009, author = {Marcirio Silveira Chaves},
title = {Uma Metodologia para Construção de Geo-Ontologias},
school = {Faculty of Sciences, University of Lisbon},
year = {2009},
month = {September},
project = {grease, geonetpt02, geonetpt01},
bibdate = {2009-09-22},
url = {http://www.linguateca.pt/documentos/TeseDoutMarcirioChaves2009.pdf},
presentation = {Chaves:UmaMetodologiaPara:2009\_presentation.pdf},
} @InProceedings{Anastacio.etal:AComparisonOf:2009, author = {Ivo Anast{\'a}cio and Bruno Martins and Pavel Calado},
title = {A Comparison of Different Approaches for Assigning Geographic Scopes to Documents},
booktitle = {INFORUM},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
project = {grease},
opturl = {},
optnote = {},
bibdate = {2009-09-10},
document = {Anastacio.etal:AComparisonOf:2009\_document.pdf},
presentation = {Anastacio.etal:AComparisonOf:2009\_presentation.pdf},
} @InProceedings{Anastacio.etal:ClassifyingDocumentsAccordingTo:2009, author = {Ivo Anast{\'a}cio and Bruno Martins and Pavel Calado},
title = {Classifying Documents According to Locational Relevance},
booktitle = {Proceedings of EPIA 2009 - Fourteenth Portuguese Conference on Artificial Intelligence},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {October},
address = {},
project = {grease},
opturl = {},
optnote = {},
bibdate = {2009-10-12},
document = {Anastacio.etal:ClassifyingDocumentsAccordingTo:2009\_document.pdf},
presentation = {Anastacio.etal:ClassifyingDocumentsAccordingTo:2009\_presentation.pdf},
} @MastersThesis{Machado:GREATGeneRegulation:2009, author = {Catia Machado},
title = {GREAT: Gene Regulation Evaluation Tool},
month = {July},
school = {University of Lisbon, Faculty of Sciences},
year = {2009},
opturl = {},
optnote = {},
bibdate = {2009-09-04},
project = {ARN},
document = {Machado:GREATGeneRegulation:2009\_document.pdf},
} @Article{Faria.etal:PeptidesEnzymes:2009, author = {Daniel Faria and Ant{\'o}nio EN Ferreira and Andre O Falcao},
title = {Enzyme classification with peptide programs: a comparative study},
journal = {BMC Bioinformatics},
volume = {10},
year = {2009},
month = {July},
pages = {231},
url = {http://www.biomedcentral.com/content/pdf/1471-2105-10-231.pdf},
doi = {10.1186/1471-2105-10-231},
issn = {1471-2105},
bibdate = {2009-08-24},
project = {peptides},
} @InProceedings{Carvalho09:Clues:Detecting:Irony, author = {Paula Carvalho and Lu{\'i}s Sarmento and M{\'a}rio J. Silva and Eug{\'e}nio de Oliveira},
title = {Clues for Detecting Irony in User-Generated Contents: Oh...!! It's \textquotedblleft{}so easy\textquotedblleft{} ;-)},
booktitle = {Proceedings of TSA'09 - Text Sentiment Analysis, held at ACM CIKM 2009},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {ACM Press},
month = {November},
address = {Hong Kong, China},
opturl = {},
optnote = {},
bibdate = {2009-11-06},
project = {OPTIMISM},
document = {Carvalho09:Clues:Detecting:Irony\_document.pdf},
presentation = {Carvalho09:Clues:Detecting:Irony\_presentation.pdf},
} @InProceedings{sarmento09:Automatic:Creation:Reference:Corpus, author = {Lu{\'i}s Sarmento and Paula Carvalho and M{\'a}rio J. Silva and Eug{\'e}nio de Oliveira},
title = {Automatic Creation of a Reference Corpus for Political Opinion Mining in User-Generated Content},
booktitle = {Proceedings of TSA'09 - 1st International CIKM Workshop on Topic-Sentiment Analysis for Mass Opinion Measurement, held at ACM CIKM 2009},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {ACM Press},
month = {November},
address = {Hong Kong, China},
opturl = {},
optnote = {},
bibdate = {2009-11-06},
project = {OPTIMISM},
document = {sarmento09\_document.pdf},
presentation = {sarmento09:Automatic:Creation:Reference:Corpus\_presentation.pdf},
} @InProceedings{Teixeira.etal:ThermInfoCollectingAnd:2009, author = {Ana L. Teixeira and Rui C Santos and Francisco Couto},
title = {ThermInfo: Collecting and Presenting Thermochemical Properties},
booktitle = {INForum},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
project = {THERMINFO},
bibdate = {2009-09-10},
document = {Teixeira.etal:ThermInfoCollectingAnd:2009\_document.pdf},
} @InProceedings{Lopes.etal:AutomatedSocialNetwork:2009, author = {Luis Filipe Lopes and João Zamite and Bruno Tavares and Francisco Couto and Fabr{\'i}cio A.B. Silva and M{\'a}rio J. Silva},
title = {Automated Social Network Epidemic Data Collector},
booktitle = {INForum - Simp{\'o}sio de Inform{\'a}tica},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-09-10},
project = {EPIWORK},
document = {Lopes.etal:AutomatedSocialNetwork:2009\_document.pdf},
} @InProceedings{Sarmento:ExploringTheVector:toappear, author = {Lu{\'i}s Sarmento and Paula Carvalho and Eug{\'e}nio Oliveira},
title = {Exploring the Vector Space Model for Finding Verb Synonyms in Portuguese},
booktitle = {Proceedings of RANLP 2009 - Recent Advances in Natural Language Processing},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {September},
address = {Borovets, Bulgaria},
opturl = {},
optnote = {},
bibdate = {2009-09-14},
} @InProceedings{costa09towards, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Towards Information Retrieval Evaluation over Web Archives},
booktitle = {Proceedings of the SIGIR 2009 Workshop on the Future of IR Evaluation},
editor = {Shlomo Geva, Jaap Kamps, Carol Peters, Tetsuya Sakai, Andrew Trotman, Ellen Voorhees},
year = {2009},
page = {37-38},
publisher = {IR Publications, Amsterdam},
month = {July},
address = {Boston, Massachusetts},
opturl = {http://staff.science.uva.nl/\widetilde{}kamps/publications/2009/geva:futu09.pdf},
bibdate = {2009-07-15},
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} @InProceedings{Machado.etal:GREATGeneRegulation:2009, author = {Catia Machado and Hugo Bastos and Francisco Couto},
title = {GREAT: Gene Regulation EvAluation Tool},
titleaddon = {},
booktitle = {Proceedings of the 3rd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB'09)},
page = {930-933},
editor = {},
year = {2009},
volume = {},
series = {},
publisher = {Lecture Notes in Computer Science, Springer Berlin / Heidelberg},
month = {},
address = {},
url = {http://www.springerlink.com/content/t82p311665820h77/},
optnote = {},
bibdate = {2009-06-23},
project = {ARN},
doi = {10.1007/978-3-642-02481-8},
document = {Machado.etal:GREATGeneRegulation:2009\_document.pdf},
} @Article{Pesquita:SemanticSimilarityIn, author = {Catia Pesquita and Daniel Faria and Andre O Falcao and Philip Lord and Francisco Couto},
title = {Semantic Similarity in Biomedical Ontologies},
titleaddon = {},
journal = {PLoS Computational Biology},
volume = {},
number = {},
year = {2009},
pages = {},
keywords = {},
url = {http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000443},
doi = {10.1371/journal.pcbi.1000443},
bibdate = {2009-05-29},
project = {boa},
} @InProceedings{Freitas:DetectionOfRelations:2009, author = {Cl{\'a}udia Freitas and Diana Santos and Cristina Mota and Hugo Gonçalo Oliveira and Paula Carvalho},
title = {Detection of relations between named entities: report of a shared task},
booktitle = {EW-2009 - Semantic Evaluations: Recent Achievements and Future Directions (NAACL-HLT 2009 Workshop)},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {Colorado, USA},
opturl = {},
optnote = {},
bibdate = {2009-05-29},
} @Article{Grego.etal:IdentificationOfChemical:2009, author = {Tiago Grego and Piotr Pezik and Francisco Couto and Dietrich Rebholz-Schuhmann},
title = {Identification of Chemical Entities in Patent Documents},
journal = {Lecture Notes in Computer Science},
volume = {5518},
publisher = {Springer},
pages = {942-949},
year = {2009},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-05-13},
project = {FiBRE},
document = {Grego.etal:IdentificationOfChemical:2009\_document.pdf},
presentation = {},
} @Article{Couto.etal:HandlingSelf-citationsUsing:2009, author = {Francisco Couto and Catia Pesquita and Tiago Grego and Paulo Verissimo},
title = {Handling self-citations using Google Scholar},
titleaddon = {},
journal = {Cybermetrics: International Journal of Scientometrics, Informetrics and Bibliometrics},
volume = {13},
number = {1},
year = {2009},
pages = {},
keywords = {},
url = {http://www.cindoc.csic.es/cybermetrics/articles/v13i1p2.html},
bibdate = {2009-05-08},
project = {CIDS},
document = {Couto.etal:HandlingSelf-citationsUsing:2009\_document.pdf},
} @article{Pesquita.etal:IdentifyingGeneOntology:2009, author = {Catia Pesquita and Tiago Grego and Francisco Couto},
title = {Identifying Gene Ontology Areas for Automated Enrichment},
journal = {Lecture Notes in Computer Science},
publisher = {Springer},
pages = {934-941},
volume = {5518},
year = {2009},
opturl = {},
optnote = {},
bibdate = {2009-04-16},
project = {BOA,aeb},
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} @Article{Taylor.etal:DynamicModularityIn:2009, author = {I.W. Taylor and R. Linding and D. Warde-Farley and Y. Liu and Catia Pesquita and Daniel Faria and S. Bull and T. Pawson and Q. Morris and J.L. Wrana},
title = {Dynamic modularity in protein interaction networks predicts breast cancer outcome},
titleaddon = {},
journal = {Nature Biotechnology},
volume = {},
number = {27},
year = {2009},
pages = {199-204},
keywords = {},
opturl = {},
bibdate = {2009-04-16},
} @InProceedings{Pesquita.etal:MeasuringCoherenceBetween:2009, author = {Catia Pesquita and Daniel Faria and Rui Lopes and Francisco Couto},
title = {Measuring coherence between electronic and manual annotations in biological databases},
booktitle = {SAC '09: Proceedings of the 2009 ACM Symposium on Applied Computing},
editor = {},
year = {2009},
page = {},
volume = {},
series = {},
publisher = {ACM},
month = {},
address = {},
opturl = {},
optnote = {},
bibdate = {2009-03-09},
project = {BOA},
document = {Pesquita.etal:MeasuringCoherenceBetween:2009\_document.pdf},
} @InProceedings{Vaz:MoViSys-:2008, author = {Ana Vaz and Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {MoViSys - Sistema de Visualização para Dispositivos M{\'o}veis},
booktitle = {3ª Confer{\^e}ncia Nacional em Interacção Pessoa-M{\'a}quina, Interacção 2008},
editor = {},
year = {2008},
page = {165-174},
volume = {},
series = {ISBN: 972-98464},
publisher = {},
month = {Outubro},
address = {},
opturl = {},
optnote = {},
project = {geovis},
bibdate = {2009-01-02},
} @Incollection{carvalho_gonnalo_oliveira2008:apendicemanual:eosharem, author = {Paula Carvalho and Hugo Gonçalo Oliveira},
title = {{A}p{\^e}ndice {G}: {M}anual de {U}tilização do {E}tiquet ({H}){AREM}},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @Incollection{carvalho_freitas2008:apendiceexemplario:eosharem, author = {Paula Carvalho and Cl{\'a}udia Freitas},
title = {{A}p{\^e}ndice {F}: {E}xempl{\'a}rio do {S}egundo {HAREM}},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @Incollection{santos2008:segundoharem:eosharem, author = {Diana Santos and Cl{\'a}udia Freitas and Hugo Gonçalo Oliveira and Paula Carvalho and Cristina Mota},
title = {{S}egundo {HAREM}: {B}alanço e perspectivas de futuro},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro, } @Incollection{freitas2008:relanoessemanticas:eosharem, author = {Cl{\'a}udia Freitas and Diana Santos and Hugo Gonçalo Oliveira and Paula Carvalho and Cristina Mota},
title = {{R}elações sem{\^a}nticas do {R}e{R}el{EM}: al{\'e}m das entidades no {S}egundo {HAREM}},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @Incollection{carvalho2008:segundoharem:eosharem, author = {Paula Carvalho and Hugo Gonçalo Oliveira and Diana Santos and Cl{\'a}udia Freitas and Cristina Mota},
title = {{S}egundo {HAREM}: {M}odelo geral, novidades e avaliação},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @Incollection{mota2008:tempoavaliar:eosharem, author = {Cristina Mota and Paula Carvalho and Cl{\'a}udia Freitas and Hugo Gonçalo Oliveira and Diana Santos},
title = {{\'E} tempo de avaliar o tempo},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @Incollection{freitas2008:apendicererelem:eosharem, author = {Cl{\'a}udia Freitas and Diana Santos and Paula Carvalho and Hugo Gonçalo Oliveira},
title = {{A}p{\^e}ndice {C}: {R}e{R}el{EM} - {R}econhecimento de {R}elações entre {E}ntidades {M}encionadas. {S}egundo {HAREM}: proposta de nova pista},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @Incollection{carvalho_freitas2008:apendicecriterios:eosharem, author = {Paula Carvalho and Cl{\'a}udia Freitas},
title = {{A}p{\^e}ndice {E}: {C}rit{\'e}rios de {ALT}},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @Incollection{santos2008:apendicesegundo:eosharem, author = {Diana Santos and Paula Carvalho and Cl{\'a}udia Freitas and Hugo Gonçalo Oliveira},
title = {{A}p{\^e}ndice {A}: {S}egundo {HAREM}: directivas de anotação},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @InCollection{gonnalo_oliveira2008:avalianaomedida:eosharem, author = {Hugo Gonçalo Oliveira and Cristina Mota and Cl{\'a}udia Freitas and Diana Santos and Paula Carvalho},
title = {{A}valiação {\`a} medida no {S}egundo {HAREM}},
year = {2008},
editor = {Cristina Mota and Diana Santos},
booktitle = {{D}esafios na avaliação conjunta do reconhecimento de entidades mencionadas: {O} {S}egundo {HAREM}},
publisher = {Linguateca},
location = {Aveiro},
month = {31 de Dezembro},
} @InProceedings{santos2008:secondharem:cplicp, author = {Diana Santos and Cl{\'a}udia Freitas and Hugo Gonçalo Oliveira and Paula Carvalho},
title = {{S}econd {HAREM}: new challenges and old wisdom},
year = {2008},
editor = {Ant{\'o}nio Teixeira and Vera L{\'u}cia Strube de Lima and Lu{\'i}s Caldas de Oliveira and Paulo Quaresma},
booktitle = {{C}omputational {P}rocessing of the {P}ortuguese {L}anguage, 8th {I}nternational {C}onference, {P}roceedings ({PROPOR} 2008)},
publisher = {Springer Verlag},
volume = {Vol. 5190},
pages = {212--215},
location = {Aveiro, Portugal},
month = {8-10 de Setembro},
} @InProceedings{mandl2008:geoclef2008:cefwnclefw, author = {Thomas Mandl and Paula Carvalho and Giorgio Maria di Nunzio and Nicola Ferro and Fred Gey and Ray Larson and Diana Santos and Christa Womser-Hacker},
title = {{G}eo{CLEF} 2008: the {CLEF} 2008 {C}ross-{L}anguage {G}eographic {I}nformation {R}etrieval {T}rack {O}verview},
year = {2008},
editor = {Francesca Borri and Alessandro Nardi and Carol Peters},
booktitle = {{C}ross {L}anguage {E}valuation {F}orum: {W}orking {N}otes for the {CLEF} 2008 {W}orkshop},
pages = {s/pp},
location = {Aarhus, Denmark},
month = {17-19 de Setembro},
url = "http://www.linguateca.pt/Diana/download/acetMandletal2008workshopCLEF.pdf", url = "http://www.clef-campaign.org/2008/working\_notes/GeoCLEF-2008-overview-notebook-paperWNfinal.pdf", } @MastersThesis{Rodrigues:AnOntologyOf:2009, author = {Catarina Rodrigues},
title = {An Ontology of the Physical Geography of Portugal},
month = {June},
school = {University of Lisbon, Faculty of Sciences},
year = {2009},
bibdate = {2009-06-09},
project = {grease, geonetpt02},
document = {Rodrigues:AnOntologyOf:2009\_document.pdf},
} @MastersThesis{Santos:GESTOEANALISE:2008, author = {Daniel Santos},
title = {Gestão e An{\'a}lise de Dados Biom{\'e}dicos},
month = {July},
school = {FCUL},
year = {2008},
opturl = {},
optnote = {},
bibdate = {2008-11-03},
project = {ispd},
document = {Santos:GESTOEANALISE:2008\_document.txt},
} @InProceedings{Pesquita:AutomatedEnrichmentOf:2008, author = {Catia Pesquita and Francisco Couto and Mario Silva},
title = {Automated Enrichment of BioOntologies},
booktitle = {First Portuguese Forum on Computational Biology (as a poster)},
editor = {},
year = {2008},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {IGC},
opturl = {http://bc.igc.gulbenkian.pt/fpbc2008/posters.html},
optnote = {},
bibdate = {2008-10-03},
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} @InProceedings{Unknown:RetrievingRelevantDocuments:2008, author = {Hugo Bastos and Catia Machado and Ana T. Freitas and Francisco Couto},
title = {Retrieving Relevant Documents from BioLiterature for the Curation of Yeast Gene Regulatory Networks},
booktitle = {First Portuguese Forum on Computational Biology (as a poster)},
editor = {},
year = {2008},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {IGC},
opturl = {http://bc.igc.gulbenkian.pt/fpbc2008/posters.html},
optnote = {},
bibdate = {2008-10-03},
project = {arn},
document = {Unknown:RetrievingRelevantDocuments:2008\_document.pdf},
poster = {Unknown:RetrievingRelevantDocuments:2008\_poster.pdf},
} @InBook{Couto:VerificationOfUncurated:2008, author = {Francisco Couto, M{\'a}rio Silva, Vivian Lee, Emily Dimmer, Evelyn Camon, Rolf Apweiler, Harald Kirsch, Dietrich Rebholz-Schuhmann},
title = {Verification of Uncurated Protein Annotations},
booktitle = {Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration},
publisher = {Idea Group Inc},
year = {2008},
month = {},
bibdate = {},
isbn = {978-1-60566-274-9},
url = {http://www.igi-global.com/reference/details.asp?id=33268},
project = {rebil},
document = {Couto:VerificationOfUncurated:2008\_document.pdf},
} @InProceedings{GomesEtAt.IWAW2008, author = {Daniel Gomes and Andr{\'e} Nogueira and João Miranda and Miguel Costa},
title = {Introducing the Portuguese web archive initiative},
booktitle = {Proceedings of the 8th International Web Archiving Workshop},
year = {2008},
month = {September},
address = {Aaarhus, Denmark},
opturl = {http://www.iwaw.net/08/},
bibdate = {2008-09-22},
document = {GomesEtAt.IWAW2008\_document.pdf},
presentation = {GomesEtAt.IWAW2008\_presentation.pdf},
} @InProceedings{Couto:IdentifyingBioentityRecognition:2008, author = {Francisco Couto and Tiago Grego and Catia Pesquita and Hugo Bastos and R. Torres and P. Sanchez and L. Pascual and C. Blaschke},
title = {Identifying Bioentity Recognition Errors of Rule-Based Text-Mining Systems},
booktitle = {IEEE Third International Conference on Digital Information Management (ICDIM)},
editor = {},
year = {2008},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {},
opturl = {},
optnote = {},
doi = {10.1109/ICDIM.2008.4746791},
project = {fibre,ARN},
bibdate = {2008-09-16},
presentation = {Couto:IdentifyingBioentityRecognition:2008\_presentation.pdf},
document = {Couto:IdentifyingBioentityRecognition:2008\_document.pdf},
} @InProceedings{Chaves10anos08, author = {Marcirio Silveira Chaves},
title = {Criação e expansão de geo-ontologias, dimensionamento de informação geogr{\'a}fica e reconhecimento de locais e seus relacionamentos em textos},
booktitle = {Encontro Linguateca: 10 anos},
editor = {},
year = {2008},
page = {},
volume = {},
series = {},
publisher = {},
month = {Setembro},
address = {Aveiro, Portugal},
opturl = {},
optnote = {},
bibdate = {2008-09-16},
project = {GREASE} document = {Chaves10anos08\_document.pdf},
presentation = {Chaves10anos08\_presentation.pdf},
} @INPROCEEDINGS{Chaves08, author = {Marcirio Silveira Chaves},
title = {Geo-ontologias e padrões para reconhecimento de locais em textos: a participação do SEI-Geo no Segundo HAREM.},
booktitle = {Desafios na avaliação conjunta do reconhecimento de entidades mencionadas: Actas do Encontro do Segundo HAREM.},
year = {2008},
crossref = {MS08},
project = {grease},
presentation = {Chaves08\_presentation.pdf},
} @PhdThesis{Martins:GeographicallyAwareWeb:2008, author = {Bruno Martins},
title = {Geographically Aware Web Text Mining},
school = {Faculty of Sciences, University of Lisbon},
year = {2008},
month = {August},
optkey = {},
opttype = {},
optaddress = {},
opturl = {},
optnumber = {},
optnote = {},
project = {grease},
bibdate = {2008-09-06},
document = {martins08phdthesis.pdf},
} @InProceedings{Cardoso:REMBRANDT-Reconhecimento:2008, author = {Nuno Cardoso},
title = {REMBRANDT - Reconhecimento de Entidades Mencionadas Baseado em Relações e AN{\'a}lise Detalhada do Texto},
booktitle = {Encontro do Segundo HAREM, PROPOR 2008},
editor = {},
year = {2008},
page = {},
url = {http://www.linguateca.pt/LivroSegundoHAREM/},
volume = {},
series = {},
publisher = {},
month = {7 de Setembro},
address = {Aveiro, Portugal},
opturl = {},
optnote = {},
project = {GREASE} bibdate = {2008-09-05},
document = {Cardoso:REMBRANDT-Reconhecimento:2008\_document.pdf},
} @InProceedings{Cardoso:NovosRumosPara:2008, author = {Nuno Cardoso},
title = {Novos rumos para a recuperação de informação geogr{\'a}fica em portugu{\^e}s},
booktitle = {Encontro Linguateca:10 anos},
editor = {},
year = {2008},
page = {},
volume = {},
url = {http://www.linguateca.pt/LivroL10/},
series = {},
publisher = {},
month = {11 de Setembro},
address = {Aveiro, Portugal},
opturl = {},
optnote = {},
project = {GREASE},
bibdate = {2008-09-05},
document = {Cardoso:NovosRumosPara:2008\_document.pdf},
} @InProceedings{Falcao.etal:peptideprograms:2008, author = {Andre O Falcao and Daniel Faria and Antonio Ferreira},
title = {Peptide Programs: Applying Fragment Programs to Protein Classification},
booktitle = {DTMBIO'08 : Proceedings of the 2008 ACM 2nd CIKM workshop on Data and Text Mining Methods in Bioinformatics},
year = {in press},
month = {October},
isbn = {} pages = {},
location = {Napa Valley, CA, USA},
doi = {},
url = {},
publisher = {ACM},
address = {New York, NY, USA},
project = {peptides},
bibdate = {03/2008},
} @InProceedings{Cardoso.etal:TheUniversityOf:2008, author = {Nuno Cardoso and Patr{\'i}cia Sousa and M{\'a}rio J. Silva},
title = {The {U}niversity of {L}isbon at {G}eo{CLEF} 2008},
editor = {Francesca Borri and others},
booktitle = {Working notes for the Cross Language Evaluation Forum, {CLEF}'2008},
address = {Aarhus, Danmark},
month = {September},
year = 2008, project = {linguateca, grease},
bibdate = {2008-09-17},
note = {},
} @InProceedings{Cardoso.etal:HandlingImplicitGeographic:2008, author = {Nuno Cardoso and M{\'a}rio J. Silva and Diana Santos},
title = {{H}andling {I}mplicit {G}eographic {E}vidence for {G}eographic {IR}},
booktitle = {Proceedings of the 17th {C}onference on {I}nformation and {K}nowledge {M}anagement, {CIKM}'2008},
publisher = {ACM},
year = 2008, address = {Napa Valley, CA, EUA},
month = {October},
project = {linguateca,grease},
bibdate = {2008-10-27},
note = {},
document = {Cardoso.etal:HandlingImplicitGeographic:2008\_document.pdf},
} @InProceedings{Santos.etal:GettingGeographicalAnswers:2008, author = {Diana Santos and Nuno Cardoso and Paula Carvalho and Iustin Dornescu and Sven Hartrumpf and Johannes Leveling and Yvonne Skalban},
title = {Getting geographical answers from {W}ikipedia: the {GIKIP} pilot at {CLEF}},
booktitle = {Working notes for the Cross Language Evaluation Forum, {CLEF}'2008},
address = {Aarhus, Danmark},
month = {September},
year = 2008, project = {linguateca, grease},
bibdate = {2008-09-17},
note = {},
} @InProceedings{Santos.etal:EvaluatingGeographicalAnswers:2008, author = {Diana Santos and Nuno Cardoso},
title = {{GIKIP}: {E}valuating geographical answers from {W}ikipedia},
booktitle = {5th {W}orkshop on {G}eographic {I}nformation {R}etrieval, GIR'08},
address = {Napa Valley, CA, EUA},
month = {October},
year = 2008, project = {grease, linguateca},
bibdate = {2008-10-30},
note = {},
} @InProceedings{cardoso08GeoCLEF, author = {Nuno Cardoso and David Cruz and Marcirio Silveira Chaves and M{\'a}rio J. Silva},
title = {Using {G}eographic {S}ignatures as {Q}uery and {D}ocument {S}copes in {G}eographic {IR}},
booktitle = {Advances in {M}ultilingual and {M}ultimodal {I}nformation {R}etrieval: 8th {W}orkshop of the {C}ross-{L}anguage {E}valuation {F}orum, {CLEF} 2007},
address = {Berlin / Heidelberg},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
volume = {5152},
pages = {802--810},
year = 2008, note = {Revised Selected papers},
bibdate = {2008-07-17},
project = {grease},
} @InProceedings{Carmo.etal:MoViSys-:2008, author = {Maria Beatriz Carmo and Ana Paula Afonso and Paulo Pombinho and Ana Vaz},
title = {MoViSys - A Visualization System for Mobile Devices},
booktitle = {Visual 2008 - 10th International Conference on Visual Information Systems,},
editor = {Springer-Verlag},
year = {2008},
page = {167-178},
volume = {LNCS 5188},
series = {},
publisher = {},
month = {September},
address = {},
opturl = {},
optnote = {},
bibdate = {2008-06-18},
project = {geovis},
document = {},
poster = {},
presentation = {},
} @InProceedings{Falcao:ResidueFragment:2005, author = {Andre O Falcao},
title = {Residue Fragment Programs for Enzyme Classification},
booktitle = {Proceedings of BKDB2005 -- Bioinformatics: knowledge discovery in biology},
editor = {Francisco Couto and M{\'a}rio J. Silva and Pedro Fernandes},
year = {2005},
page = {24-28},
month = {June},
bibdate = {2008-06-17},
project = {peptides},
document = {},
poster = {},
presentation = {},
} @InProceedings{Carreira.etal:OnThe:2007, author = {Paulo J. F. Carreira and Helena Galhardas and João Pereira and Fernando Martins and M{\'a}rio J. Silva},
title = {On the performance of one-to-many data transformations},
booktitle = {Proceedings of the Fifth International Workshop on Quality in Databases, QDB 2007, at the VLDB 2007 conference},
editor = {Venkatesh Ganti and Felix Naumann},
day = {23},
year = {2007},
page = {39-48},
volume = {},
series = {},
publisher = {},
month = {September},
address = {Vienna, Austria},
opturl = {},
optnote = {},
bibdate = {2007-09-23},
document = {Carreira.etal:OnThe:2008\_document.pdf},
poster = {},
presentation = {},
} @Article{Pesquita.etal:MetricsForGO:2008, author = {Catia Pesquita and Daniel Faria and Hugo Bastos and Ant{\'o}nio Ferreira and Andre O Falcao and Francisco Couto},
title = {Metrics for GO based protein semantic similarity: a systematic evaluation},
journal = {BMC Bioinformatics},
volume = {9},
year = {2008},
month = {April},
number = {Suppl 5},
pages = {S4},
url = {http://www.biomedcentral.com/1471-2105/9/S5/S4},
doi = {10.1186/1471-2105-9-S5-S4},
issn = {1471-2105},
bibdate = {2008-05-08},
project = {boa, peptides},
} @InProceedings{Cardoso.etal:ToSeparateOr:2008, author = {Nuno Cardoso and Diana Santos},
title = {To Separate or Not to Separate? Reflections about Current GIR Practice},
booktitle = {Workshop on Novel Methodologies for Evaluation in Information Retrieval, held at ECIR 2008},
year = {2008},
month = {March},
url = {http://www.trebleclef.eu/program\_ws\_ecir08.php},
bibdate = {2008-05-08},
project = {grease, linguateca-xldb},
document = {NMEIR2008\_v15.pdf},
presentation = {NMEIR2008\_apresentacao2.pdf},
} @InProceedings{Bastos.etal:BOLOSBLASTOntology-Linked:2008, author = {Hugo Bastos and Daniel Faria and Catia Pesquita and Andre O. Falcao},
title = {BOLOS: BLAST Ontology-Linked hOmologue Stars},
booktitle = {SAC '08: Proceedings of the 2008 ACM symposium on Applied computing},
year = {2008},
month = {March},
isbn = {978-1-59593-753-7},
pages = {1278--1281},
location = {Fortaleza, Ceara, Brazil},
doi = {10.1145/1363686.1363982},
url = {http://doi.acm.org/10.1145/1363686.1363982},
publisher = {ACM},
address = {New York, NY, USA},
project = {peptides},
bibdate = {03/2008},
} @Article{Gomes.etal:TheViuvaNegra:2008, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {The Vi{\'u}va Negra crawler: an experience report},
journal = {Software: Practice and Experience (SPE)},
publisher = {Wiley InterScience},
volume = {38},
number = {2},
year = {2008},
pages = {161--168},
month = {February},
url = {http://dx.doi.org/10.1002/spe.825},
doi = {10.1002/spe.825},
project = {tumba},
} @MastersThesis{Bastos:ClusteringAlgorithmsFor:2008, author = {Hugo Bastos},
title = {Clustering algorithms for improving protein functional classification techniques},
school = {University of Lisbon, Faculty of Sciences},
year = {2008},
month = {February},
bibdate = {2008-05-09},
project = {peptides},
} @InBook{Pesquita.etal:UntanglingBioOntologiesFor:2008, author = {Catia Pesquita and Daniel Faria and Tiago Grego and Francisco Couto and M{\'a}rio J. Silva},
title = {Untangling BioOntologies for Mining Biomedical Information},
booktitle = {Handbook of Research on Text and Web Mining Technologies},
publisher = {Idea Group Inc},
year = {2008},
month = {SEPTEMBER},
bibdate = {2008-05-08},
isbn = {9781599049908},
url = {http://books.google.com/books?id=sGSSLUAAdBIC\&pg=PA328\&lpg=PA328\&dq=Advanced+Data+Mining+Technologies+in+Bioinformatics+BioLiterature:+towards+automatic+annotation+of+genes+and+proteins\&source=bl\&ots=hdWYXjHX1w\&sig=UGlFJBKEETegUV2hG6vX9dIMQnM\&hl=en\&ei=DmnjSdnIG4PW-AaL9YGPCQ\&sa=X\&oi=book\_result\&ct=result\&resnum=7#PPA314,M1},
project = {boa},
abstract = {Biomedical research generates a vast amount of information that is ultimately stored in scientific publications or in databases. The information in scientific texts is unstructured and thus hard to access, whereas the information in databases, although more accessible, often lacks in contextualization. The integration of information from these two kinds of sources is crucial for managing and extracting knowledge. By structuring and defining the concepts and relationships within a biomedical domain, BioOntologies have taken a key role in this integration. This chapter describes the role of BioOntologies in sharing, integrating and mining biological information, discusses some of the most relevant BioOntologies and illustrates how they are being used by automatic tools to improve our understanding of life.},
document = {Pesquita.etal:UntanglingBioOntologiesFor:2008\_document.pdf},
} @InProceedings{Gomes-Alves:ProteinsPotentially:2008, author = {P. Gomes-Alves and A.V. Coelho and Francisco Couto and P. Nogueira and D. Penque},
title = {Proteins potentially involved in F508del-CFTR trafficking restoration process},
booktitle = {HUPO 7th Annual World Congress (poster)},
editor = {},
year = {2008},
page = {},
volume = {},
series = {},
publisher = {},
month = {},
address = {Amsterdam},
opturl = {},
optnote = {},
bibdate = {2008-05-27},
project = {ispd},
document = {Gomes-Alves:ProteinsPotentiallyInvolved:2008\_document.pdf},
poster = {},
presentation = {},
} @MastersThesis{Andrade:ProcessingGeographicQueries:2007, author = {Leonardo Andrade},
title = {Processing Geographic Queries and Architectural Experiments in the Tumba! Search Engine},
school = {University of Lisbon, Faculty of Sciences},
year = {2007},
month = {December},
project = {grease, tumba},
document = {Andrade:ProcessingGeographicQueries:2007\_document.pdf},
} @misc{cardoso2007:girchallenges:fcul, author = {Nuno Cardoso},
title = {Geographic IR Challenges},
year = {2007},
howpublished = {Presentation at SINTEF ICT, Oslo, Norway},
month = {December},
day = {4},
project = {grease, linguateca-xldb},
bibdate = {2007-12-04},
presentation = {200715GIRChallangesSINTEF.pdf},
} @MastersThesis{Pesquita:ImprovingSemanticSimilarity:2007, author = {Catia Pesquita},
title = {Improving semantic similarity for proteins based on the Gene Ontology},
school = {University of Lisbon, Faculty of Sciences},
year = {2007},
month = {December},
document = {CatiaPesquita.pdf},
} @MastersThesis{Freitas:UserInterfacesFor:2007, author = {S{\'e}rgio Freitas},
title = {User Interfaces for Geographic Information Retrieval Systems},
school = {University of Lisbon, Faculty of Sciences},
year = {2007},
month = {December},
note = {},
project = {grease, tumba},
} @Proceedings{Silva.etal:CIKM2007:2007, editor = {M{\'a}rio J. Silva and Alberto A. F. Laender and Ricardo Baeza-Yates and Deborah L. McGuiness and Bjorn Olstad and Oystein Haug Olsen and Andr{\'e} Falcão},
title = {Sixteenth ACM conference on information and knowledge management},
publisher = {ACM Press},
year = {2007},
month = {November},
isbn = {978-1-59593-803-9},
doi = {},
} @InProceedings{Carmo.etal:VisualizationOfGeographic:2007, author = {Maria Beatriz Carmo and Ana Paula Afonso and Paulo Pombinho},
title = {Visualization of Geographic Query Results for Small Screen Devices},
booktitle = {GIR'07 - 4th Workshop on Geographical Information Retrieval (held at ACM CIKM 2007)},
year = {2007},
month = {November},
bibdate = {2008-05-01},
doi = {10.1145/1316948.1316965},
project = {geovis},
} @InProceedings{Cardoso.etal:QueryExpansionThrough:2007, author = {Nuno Cardoso and M{\'a}rio J. Silva},
title = {Query Expansion through Geographical Feature Types},
booktitle = {GIR'07 - 4th Workshop on Geographic Information Retrieval (held at ACM CIKM'07)},
year = {2007},
publisher = {ACM Press},
month = {November},
url = {http://www.geo.unizh.ch/\widetilde{}rsp/gir07/},
doi = {10.1145/1316948.1316963},
project = {grease},
bibdate = {2007-11-09},
presentation = {Cardoso.etal:QueryExpansionThrough:2007\_presentation.pdf},
document = {Cardoso.etal:QueryExpansionThrough:2007\_document.pdf},
} @MastersThesis{Cruz:Sidra5ASearch:2007, author = {David Cruz},
title = {Sidra5: A Search System with Geographic Signatures},
school = {University of Lisbon, Faculty of Sciences},
year = {2007},
month = {November},
project = {grease, tumba},
document = {PEI-dcruz.pdf},
} @Book{Santos.Cardoso:LivroHAREM:2007, author = {Diana Santos and Nuno Cardoso},
title = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
publisher = {Linguateca},
year = {2007},
month = {November},
url = {http://www.linguateca.pt/LivroHAREM/},
note = {ISBN: 978-989-20-0731-1},
bibdate = {2007-11-01},
project = {linguateca-xldb},
} @InBook{Seco.etal:arquitectuta:2007, author = {Nuno Seco and Nuno Cardoso and Rui Vilela and Diana Santos},
title = {A arquitectura dos programas de avaliação do HAREM},
chapter = {19},
editor = {Diana Santos and Nuno Cardoso},
publisher = {Linguateca},
year = {2007},
month = {November},
isbn = {978-989-20-0731-1},
booktitle = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
url = {http://acdc.linguateca.pt/aval\_conjunta/LivroHAREM/Cap19-SantosCardoso2007-Secoetal.pdf},
bibdate = {2007-11-01},
pages={283--306},
project = {linguateca-xldb},
} @InBook{Santos.etal:AvaliacaoNoHAREM:2007, author = {Diana Santos and Nuno Cardoso and Nuno Seco},
title = {Avaliação no HAREM: M{\'e}todos e medidas},
booktitle = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
chapter = {18},
publisher = {Linguateca},
editor = {Diana Santos and Nuno Cardoso},
year = {2007},
url = {http://www.linguateca.pt/LivroHAREM/},
month = {November},
isbn = {978-989-20-0731},
note = {Also available as Technical Report DI/FCUL TR 06-17},
pages = {245--282},
project = {linguateca-xldb},
} @InBook{Cardoso.etal:DirectivasParaA:2007, author = {Nuno Cardoso and Diana Santos and Rui Vilela},
title = {Directivas para a identificação e classificação morfol{\'o}gica na colecção dourada do HAREM},
chapter = {17},
editor = {Diana Santos and Nuno Cardoso},
publisher = {Linguateca},
year = {2007},
month = {November},
isbn = {978-989-20-0731-1},
booktitle = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
url = {http://www.linguateca.pt/LivroHAREM/},
pages = {239--244},
project = {linguateca-xldb},
} @InBook{Cardoso.etal:DirectivasParaA:2007a, author = {Nuno Cardoso and Diana Santos},
title = {Directivas para a identificação e classificação sem{\^a}ntica na colecção dourada do HAREM},
chapter = {16},
publisher = {Linguateca},
editor = {Nuno Cardoso and Diana Santos},
year = {2007},
month = {November},
isbn = {978-989-20-0731-1},
pages = {211--238},
booktitle = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
url = {http://www.linguateca.pt/LivroHAREM/},
project = {linguateca-xldb},
} @InBook{Santos.etal:BalancoDoPrimeiro:2007, author = {Diana Santos and Nuno Cardoso},
title = {Balanço do Primeiro HAREM e perspectivas de trabalho futuro},
chapter = {7},
publisher = {Linguateca},
editor = {Diana Santos and Nuno Cardoso},
year = {2007},
month = {November},
isbn = {978-989-20-0731-1},
note = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
url = {http://www.linguateca.pt/LivroHAREM/},
pages={87--94},
project ={linguateca-xldb},
} @InBook{Cardoso.etal:ValidacaoEstatisticaDos:2007, author = {Nuno Cardoso and M{\'a}rio J. Silva and Mar{\'i}lia Antunes},
title = {Validação estat{\'i}stica dos resultados do Primeiro HAREM},
booktitle = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
chapter = {5},
publisher = {Linguateca},
editor = {Diana Santos and Nuno Cardoso},
year = {2007},
month = {November},
isbn = {978-989-20-0731-1},
url = {http://acdc.linguateca.pt/aval\_conjunta/LivroHAREM/Cap05-SantosCardoso2007-Cardosoetal.pdf},
pages = {59--77},
project = {linguateca-xldb},
} @InBook{Santos.etal:BreveIntroducaoAo:2007, author = {Diana Santos and Nuno Cardoso},
title = {Breve introdução ao HAREM},
chapter = {1},
publisher = {Linguateca},
year = {2007},
editor = {Diana Santos and Nuno Cardoso},
month = {November},
isbn = {978-989-20-0731-1},
url = {http://www.linguateca.pt/LivroHAREM/},
booktitle = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
pages = {1--16},
project = {linguateca-xldb},
} @InBook{Martins.etal:OSistemaCaGE:2007, author = {Bruno Martins and M{\'a}rio J. Silva and Marcirio Silveira Chaves},
title = {O sistema CaGE no HAREM - reconhecimento de entidades geogr{\'a}ficas em textos em l{\'i}ngua portuguesa},
booktitle = {Reconhecimento de entidades mencionadas em portugu{\^e}s: Documentação e actas do HAREM, a primeira avaliação conjunta na {\'a}rea},
chapter = {8},
publisher = {Linguateca},
year = {2007},
isbn = {978-989-20-0731-1},
month = {November},
pages = {97-112},
url = {http://acdc.linguateca.pt/aval\_conjunta/LivroHAREM/Cap08-SantosCardoso2007-Martinsetal.pdf},
bibdate = {2007-11-01},
project = {grease, linguateca-xldb},
} @InProceedings{Pombinho.etal:VisualizacaoDeInformacao:2007, author = {Paulo Pombinho and Maria Beatriz Carmo and Ana Paula Afonso},
title = {Visualização de Informação Georeferenciada em Dispositivos M{\'o}veis},
booktitle = {Encontro Portugu{\^e}s de Computação Gr{\'a}fica (EPCG'07)},
year = {2007},
month = {October},
document = {epcg07.pdf},
project = {geovis},
bibdate = {2008-05-07},
} @Misc{cardoso2007:novosrumos:fcul, author = {Nuno Cardoso},
title = {Novos rumos na expansão de pesquisas para RIG},
year = {2007},
howpublished = {Presentation at the 5th Doctoral Simposium of Linguateca},
location = {Faculty of Sciences, University of Lisbon},
month = {4 October},
url = {http://www.linguateca.pt/documentos/CardosoSDOut2007.pdf},
bibdate = {2008-05-10},
project = {grease, linguateca-xldb},
} @InProceedings{Afonso:TeachingQualityOf:2007, author = {Ana Paula Afonso},
title = {Teaching Quality of Software at FCUL},
booktitle = {TEQUA Workshop - QUATIC 2007},
year = {2007},
month = {September},
document = {quatic\_tequa07.pdf},
presentation = {TEQUA-07-DIFCUL.pdf},
bibdate = {2008-05-07},
} @PhdThesis{Carreira:MapperAnEfficient:2007, author = {Paulo Carreira},
title = {Mapper: An Efficient Data Transformation Operator},
school = {University of Lisbon, Faculty of Sciences},
year = {2007},
month = {September},
bibdate = {2008-05-08},
} @InProceedings{Martins.etal:XLDBatGeoCLEF:Springer:2007, author = {Bruno Martins and Nuno Cardoso and Marcirio Silveira Chaves and Leonardo Andrade and M{\'a}rio J. Silva},
title = {The University of Lisbon at GeoCLEF 2006},
booktitle = {Evaluation of Multilingual and Multi-modal Information Retrieval - 7th Workshop of the Cross-Language Evaluation Forum, CLEF 2006},
year = {2006},
editor = {Carol Peters and Paul Clough and Fredric C. Gey and Jussi Karlgren and Bernardo Magnini and Douglas W. Oard and Maarten de Rijke and Maximilian Stempfhuber},
month = {September},
url = {http://www.springerlink.com/content/c741n23l50222g2n/},
project = {grease},
bibdate = {2007-09-10},
note = {Revised Selected papers},
poster = {200624martins06geoclefPoster.pdf},
presentation = {200624martins06geoclefPresentation.pdf},
} @InProceedings{Cardoso.etal:TheUniversityOf:2007, author = {Nuno Cardoso and David Cruz and Marcirio Chaves and M{\'a}rio J. Silva},
title = {The University of Lisbon at GeoCLEF 2007},
booktitle = {Working Notes of CLEF 2007},
year = {2007},
month = {September},
day = {9-21} editor },
address = {Budapest, Hungary},
url = {http://www.clef-campaign.org/2007/working\_notes/CLEF2007WN-Contents.html},
project = {tumba, grease},
bibdate = {2007-09-21},
document = {200702cardoso07geoclef.pdf},
poster = {200702cardoso07geoclefPoster.pdf},
presentation = {200702cardoso07geoclefPresentation.pdf},
} @Article{Carreira.etal:One-to-manyTransformationThrough:2007, author = {Paulo Carreira and Helena Galhardas and Ant{\'o}nia Lopes and João Pereira},
title = {One-to-many transformation through data mappers},
journal = {Data and Knowledge Engineering Journal (DKE)},
year = {2007},
volume = {62},
number = {3},
pages = {483-503},
month = {September},
url = {http://dx.doi.org/10.1016/j.datak.2006.08.011},
} @InProceedings{Couto.etal:FilteringBioentityRecognition:2007, author = {Francisco Couto and Tiago Grego and Rafael Torres and Pablo Sanchez and Leandro Pascual and Christian Blaschke},
title = {Filtering Bioentity Recognition Errors in Bioliterature using a Case-based Approach},
booktitle = {BioLINK SIG at 15th International Conference on Intelligent Systems for Molecular Biology / 6th European Conference on Computational Biology (ISMB/ECCB)},
year = {2007},
month = {July},
optdocument = {Filtering Bioentity Recognition Errors.pdf},
bibdate = {2008-05-07},
project = {FiBRE},
document = {Couto.etal:FilteringBioentityRecognition:2007\_document.pdf},
} @InProceedings{Bastos.etal:UsingGOTerms:2007, author = {Hugo Bastos and Daniel Faria and Catia Pesquita and Andre O. Falcao},
title = {Using GO terms to evaluate protein clustering},
booktitle = {BioOntologies SIG at ISMB/ECCB - 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)},
year = {2007},
month = {July},
bibdate = {2008-05-07},
project = {peptides},
} @InProceedings{Pesquita.etal:EvaluatingGO-basedSemantic:2007, author = {Catia Pesquita and Daniel Faria and Hugo Bastos and Andre O. Falcao and Francisco Couto},
title = {Evaluating GO-based Semantic Similarity Measures},
booktitle = {BioOntologies SIG at ISMB/ECCB - 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB)},
year = {2007},
month = {July},
bibdate = {2008-05-07},
project = {boa},
document = {Pesquita.etal:EvaluatingGO-basedSemantic:2007\_document.pdf},
} @InProceedings{Faria.etal:ProteinOnWebTool:2007, author = {Daniel Faria and Catia Pesquita and Francisco Couto and Andre O. Falcao},
title = {ProteinOn: Web Tool for Protein Semantic Similarity},
booktitle = {Poster at ISMB/ECCB 2007},
year = {2007},
month = {July},
project = {boa},
poster = {Faria.etal:ProteinOnWebTool:2007\_poster.pdf},
} @InProceedings{Pombinho.etal:Geo-referencedInformationVisualization:2007, author = {Paulo Pombinho and Ana Paula Afonso and Maria Beatriz Carmo},
title = {Geo-referenced Information Visualization on Mobile Devices},
booktitle = {Workshop sobre Sistemas M{\'o}veis e Ub{\'i}quos (WSMU'07)},
year = {2007},
month = {June},
bibdate = {2008-05-07},
project = {geovis},
document = {WSMU07.pdf},
} @Article{Couto.etal:MeasuringSemanticSimilarity:2007, author = {Francisco Couto and M{\'a}rio J. Silva and Pedro M. Coutinho},
title = {Measuring Semantic Similarity between Gene Ontology Terms},
month = {April},
journal = {Data and Knowledge Engineering, Elsevier},
volume = {61},
number = {1},
year = {2007},
doi = {10.1016/j.datak.2006.05.003},
url = {http://dx.doi.org/10.1016/j.datak.2006.05.003},
bibdate = {2008-05-07},
projects = {boa},
} @TechReport{Faria.etal:ProteInOnAWeb:2007, author = {Daniel Faria and Catia Pesquita and Francisco Couto and Andre O. Falcao},
title = {ProteInOn: A Web Tool for Protein Semantic Similarity},
institution = {DI FCUL},
year = {2007},
month = {March},
number = {TR 07-6},
optdocument = {ProteInOn.pdf},
url = {http://www.di.fc.ul.pt/tech-reports/07-6.pdf},
bibdate = {2008-05-07},
project = {boa},
document = {Faria.etal:ProteInOnAWeb:2007\_document.pdf},
} @InProceedings{cardoso2007:especiesurvey:fcul, author = {Nuno Cardoso},
title = {Diz que {\'e} uma esp{\'e}cie de survey sobre Query Expansion},
year = {2007},
booktitle = {Presentation at the 4th Doctoral Simposium of Linguateca},
location = {Faculty of Sciences, University of Lisbon},
day = {20},
month = {March},
url = {http://www.linguateca.pt/documentos/CardosoSimposioMarco2007.pdf},
bibdate = {2007-03-20},
project = {linguateca-xldb, grease},
} @InBook{Cardoso.etal:WPT03A:2007, author = {Nuno Cardoso and Bruno Martins and Daniel Gomes and M{\'a}rio J. Silva},
title = {WPT 03: a primeira colecção p{\'u}blica proveniente de uma recolha da web portuguesa},
booktitle = {Avaliação conjunta: um novo paradigma no processamento computacional da l{\'i}ngua portuguesa},
chapter = {23},
publisher = {IST Press},
editor = {Diana Santos},
year = {2007},
month = {March},
isbn = {978-972-8469-60-8},
url = {http://istpress.ist.utl.pt/lavaliacaoconjunta.html},
bibdate = {2007-03-01},
project = {tumba, linguateca-xldb, wpt},
} @InProceedings{Chaves.etal:DataModelFor:2007, author = {Marcirio Chaves and Catarina Rodrigues and M{\'a}rio J. Silva},
title = {Data Model for Geographic Ontologies Generation},
booktitle = {XATA 2007 - XML: Aplicações e Tecnologias Associadas},
year = {2007},
page = {47-58},
month = {February},
bibdate = {2008-05-07},
project = {grease, geonet, geonetpt02},
document = {xata2007-camera-ready.pdf},
presentation = {apresentacao-xata2007.pdf},
} @Article{Afonso.etal:GeographicInformationRetrieval:2007, author = {Ana Paula Afonso and Sergio Freitas},
title = {Geographic Information Retrieval Systems for Mobile Devices},
journal = {The Mediterranean Journal of Computers and Networks - Special Issue on Mobile and Ubiquitous},
year = {2007},
volume = {3-1},
note = {ISBN: 1744-2397},
url = {http://www.medjcn.com/vol3-1.htm},
project = {grease},
} @InProceedings{Cardoso.etal:XLDBatAdHoc2006:Springer:2007, author = {Nuno Cardoso and M{\'a}rio J. Silva and Bruno Martins},
title = {The University of Lisbon at CLEF 2006 Ad-Hoc Task},
editor = {Carol Peters and Paul Clough and Fredric C. Gey and Jussi Karlgren and Bernardo Magnini and Douglas W. Oard and Maarten de Rijke and Maximilian Stempfhuber},
booktitle = {Evaluation of Multilingual and Multi-modal Information Retrieval - 7th Workshop of the Cross-Language Evaluation Forum, CLEF 2006},
year = {2007},
address = {Berlin / Heidelberg},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
volume = {4730},
pages = {51--56},
project = {tumba},
note = {Revised Selected papers},
url = {http://www.springerlink.com/content/1036711uu1m88443/},
bibdate = {2007-09-07},
} @PhdThesis{Gomes:WebModellingFor:2006, author = {Daniel Gomes},
title = {Web Modelling for Web Warehouse Design},
school = {University of Lisbon, Faculty of Sciences},
year = {2006},
month = {December},
project = {tumba},
optdocument = {webModellingWebWarehouse.pdf},
url = {http://www.di.fc.ul.pt/tech-reports/07-12.pdf},
note = {Also available as Technical Report DI/FCUL TR 07-12},
bibdate = {2008-05-08},
} @Article{Couto.etal:GOAnnotatorLinkingElectronic:2006, author = {Francisco Couto and M{\'a}rio J. Silva and V. Lee and E. Dimmer and E. Camon and R. Apweiler and H. Kirsch and D. Rebholz-Schuhmann},
title = {GOAnnotator: linking electronic protein GO annotation to evidence text},
journal = {Journal of Biomedical Discovery and Collaboration},
volume = {19},
number = {1},
pages = {-},
year = {2006},
month = {December},
url = {http://www.j-biomed-discovery.com/content/1/1/19},
doi = {10.1186/1747-5333-1-19},
project = {rebil},
} @MastersThesis{NunoCardoso:AvaliacaoSREM:2006, author = {Nuno Cardoso},
title = {Avaliação de Sistemas de Reconhecimento de Entidades Mencionadas},
school = {Faculdade de Engenharia da Universidade do Porto},
year = {2006},
month = {December},
document = {CardosoTeseASREM.pdf},
project = {linguateca-xldb},
bibdate = {2006-11-30},
} @TechReport{Gomes.etal:TheViuvaNegra:2006, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {The Viuva Negra Crawler},
institution = {University of Lisbon, Faculty of Sciences},
year = {2006},
number = {TR DI/FCUL 06-21},
month = {November},
url = {http://www.di.fc.ul.pt/tech-reports/06-21.pdf},
project = {tumba},
} @InProceedings{Rodrigues.etal:UmaRepresentacaoOntologica:2006, author = {Catarina Rodrigues and Marcirio Chaves and M{\'a}rio J. Silva},
title = {Uma Representação Ontol{\'o}gica da Geografia F{\'i}sica de Portugal},
booktitle = {IX Encontro de Utilizadores de Informação Geogr{\'a}fica - ESIG 2006},
year = {2006},
address = {Oeiras, Portugal},
month = {November},
project = {grease, geonet, geonetpt02},
document = {Rodrigues.etal:UmaRepresentacaoOntologica:2006\_document.pdf},
presentation = {ESIG2006-camera-ready.pdf},
} @TechReport{Cardoso.etal:AvaliacaoNoHAREM:2006, author = {Nuno Cardoso and Diana Santos and Nuno Seco},
title = {Avaliação no HAREM: M{\'e}todos e medidas},
institution = {Faculty of Sciences, University of Lisbon},
year = {2006},
number = {DI/FCUL TR-06-17},
month = {November},
url = {http://www.di.fc.ul.pt/tech-reports/06-17.pdf},
project = {linguateca-xldb},
bibdate = {2006-11-01},
} @TechReport{Cardoso.etal:DirectivasMorfologia:2006, author = {Nuno Cardoso and Diana Santos and Rui Vilela},
title = {Directivas para identificação e classificação morfol{\'o}gica na colecção dourada do HAREM},
institution = {Faculty of Sciences, University of Lisbon},
year = {2006},
number = {DI/FCUL TR-06-19},
month = {November},
url = {http://www.di.fc.ul.pt/tech-reports/06-19.pdf},
bibdate = {2006-11-01},
project = {linguateca-xldb},
} @InProceedings{Couto.etal:ValidatingAssociationsIn:2006, author = {Francisco Couto and M{\'a}rio J. Silva and Pedro M. Coutinho},
title = {Validating Associations in Biological Databases},
booktitle = {Proceedings of the 2006 ACM CIKM International Conference on Information and Knowledge Management, Arlington, Virginia, USA, November 6-11, 2006},
year = {2006},
volume = {November},
pages = {142--151},
url = {http://doi.acm.org/10.1145/1183614.1183639},
doi = {10.1145/1183614.1183639},
project = {rebil},
document = {cikm262-couto.pdf},
} @TechReport{Cardoso.etal:DirectivasSemantica:2006, author = {Nuno Cardoso and Diana Santos},
title = {Directivas para identificação e classificação sem{\^a}ntica na colecção dourada do HAREM},
institution = {Faculty of Sciences, University of Lisbon},
year = {2006},
number = {DI/FCUL TR-06-18},
month = {November},
url = {http://www.di.fc.ul.pt/tech-reports/06-18.pdf},
bibdate = {2006-11-01},
project = {linguateca-xldb},
} @InProceedings{Pombinho.etal:PesquisaDeImagens:2006, author = {Paulo Pombinho and Ana Paula Afonso},
title = {Pesquisa de Imagens na Web: estudo de Usabilidade},
booktitle = {Interacção 2006 - 2ª Confer{\^e}ncia Nacional em Interacção Pessoa-M{\'a}quina},
year = {2006},
month = {October},
project = {grease},
document = {interaccao2006.pdf},
} @Misc{Cardoso:AutomaticQueryReformulation:2006, author = {Nuno Cardoso},
title = {Automatic Query Reformulation using Contextual Information},
howpublished = {Presentation at the 3rd Doctoral Simposium of Linguateca},
address = {Faculty of Sciences, University of Lisbon},
month = {3-4 October},
year = {2006},
project = {grease, linguateca-xldb},
bibdate = {2006-10-03},
presentation = {200614cardoso06PhDpresentation.pdf},
} @Article{Falcao.etal:FlexibleKernelsFor:2006, author = {Andre O. Falcao and Thibault Langlois and Andreas Wichert},
title = {Flexible Kernels for RBF Networks},
journal = {Neurocomputing},
year = {2006},
volume = {69},
pages = {2356-2359},
month = {September},
url = {http://dx.doi.org/10.1016/j.neucom.2006.03.006},
} @InProceedings{Martins.etal:XLDBatGeoCLEF:2006, author = {Bruno Martins and Nuno Cardoso and Marcirio Chaves and Leonardo Andrade and M{\'a}rio J. Silva},
title = {The University of Lisbon at GeoCLEF 2006},
booktitle = {Working Notes of CLEF 2006},
year = {2006},
address = {Alicante, Spain},
editor = {Carol Peters et al},
month = {September},
url = {http://www.clef-campaign.org/2006/working\_notes/workingnotes2006/CLEF2006WN-Contents.html},
document = {200624martins06geoclef.pdf},
poster = {200624martins06geoclefPoster.pdf},
presentation = {200624martins06geoclefPresentation.pdf},
project = {grease, tumba},
bibdate = {2006-09-23},
note = {Republished in 2007 by Springer in volume 4730 of Lecture Notes in Computer Science, pp. 986--994},
} @InProceedings{Cardoso.etal:XLDBatCLEFadhoc:2006, author = {Nuno Cardoso and M{\'a}rio J. Silva and Bruno Martins},
title = {The University of Lisbon at CLEF 2006 Ad-Hoc Task},
booktitle = {Working Notes of CLEF 2006},
year = {2006},
editor = {Carol Peters et al},
address = {Alicante, Spain},
month = {September},
url = {http://www.clef-campaign.org/2006/working\_notes/workingnotes2006/CLEF2006WN-Contents.html},
bibdate = {2006-09-23},
project = {tumba},
note = {Republished in 2007 by Springer in volume 4730 of Lecture Notes in Computer Science, pp. 51--56},
document = {200623cardoso06adhoc.pdf},
poster = {200623cardoso06adhocPoster.pdf},
} @InProceedings{Gomes.etal:DesignAndSelection:2006, author = {Daniel Gomes and Sergio Freitas and M{\'a}rio J. Silva},
title = {Design and Selection Criteria for a National Web Archive},
booktitle = {ECDL 2006 - 10th European Conference on Research and Advanced Technology for Digital Libraries},
number = {4172/2006},
year = {2006},
series = {LNCS},
month = {September},
pages = {196-207},
publisher = {Springer-Verlag},
project = {tumba},
doi = {10.1007/11863878\_17},
url = {http://dx.doi.org/10.1007/11863878\_17},
presentation = {tombaECDLpresentation.pdf},
} @Article{Falcao.etal:AReal-timeVisualization:2006, author = {Andre O. Falcao and Manuel Pr{\'o}spero dos Santos and Jos{\'e} G. Borges},
title = {A real-time visualization tool for forest ecosystem management decision support},
journal = {Computers and Electronics in Agriculture},
year = {2006},
number = {53},
pages = {3-12},
month = {August},
} @InProceedings{Andrade.etal:RelevanceRankingFor:2006, author = {Leonardo Andrade and M{\'a}rio J. Silva},
title = {Relevance Ranking for Geographic IR},
booktitle = {GIR-2006, the 3rd Workshop on Geographical Information Retrieval (held at SIGIR 2006)},
year = {2006},
month = {August},
document = {anrade.pdf},
} @InProceedings{Santos.etal:ThePlaceOf:2006, author = {Diana Santos and Marcirio Chaves},
title = {The place of place in geographical IR},
booktitle = {GIR06, the 3rd Workshop on Geographical Information Retrieval (held at ACM SIGIR 2006)},
year = {2006},
month = {August},
project = {grease, linguateca-xldb},
document = {SantosChavesGeoSIGIR\_camera\_ready.pdf},
} @InProceedings{Martins.etal:HandlingLocationsIn:2006, author = {Bruno Martins and M{\'a}rio J. Silva and Sergio Freitas and Ana Paula Afonso},
title = {Handling Locations in Search Engine Queries},
booktitle = {Proceedings of GIR-2006, the 3rd Workshop on Geographical Information Retrieval (held at ACM SIGIR 2006)},
year = {2006},
month = {August},
project = {grease},
document = {querie-disambig.pdf},
} @Article{Silva.etal:AddingGeographicScopes:2006, author = {M{\'a}rio J. Silva and Bruno Martins and Marcirio Chaves and Nuno Cardoso and Ana Paula Afonso},
title = {Adding Geographic Scopes to Web Resources},
journal = {CEUS - Computers, Environment and Urban Systems},
year = {2006},
publisher = {Elsevier Science},
volume = {30},
number = {4},
pages = {378-399},
month = {July},
url = {http://dx.doi.org/10.1016/j.compenvurbsys.2005.08.003},
doi = {10.1016/j.compenvurbsys.2005.08.00},
project = {grease},
document = {grease.pdf},
} @InProceedings{Freitas.etal:MobileGeotumbaGeographic:2006, author = {Sergio Freitas and Ana Paula Afonso and M{\'a}rio J. Silva},
title = {Mobile Geotumba: Geographic Information Retrieval System for Mobile Devices},
booktitle = {4th MiNEMA workshop},
year = {2006},
month = {July},
projct = {grease},
document = {minema.pdf},
} @InProceedings{Gomes.etal:ModellingInformationPersistence:2006, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {Modelling Information Persistence on the Web},
booktitle = {Proceedings of the 6th International Conference on Web Engineering, ICWE 2006, Palo Alto, California, USA, July 11-14, 2006},
year = {2006},
month = {July},
doi = {10.1145/1145581.1145623},
pages = {193-200},
url = {http://doi.acm.org/10.1145/1145581.1145623},
document = {fp613-gomes.pdf},
} @Misc{Cardoso:HAREMEMiniHAREM:2006, author = {Nuno Cardoso},
title = {HAREM e MiniHAREM: Uma an{\'a}lise comparativa},
note = {Apresentação no Encontro HAREM},
address = {Porto, Portugal},
month = {15 de Julho},
year = {2006},
project = {linguateca-xldb},
url = {http://poloxldb.linguateca.pt/harem.php?l=encontroharem},
presentation = {200609cardoso06encontroHAREM.pdf},
bibdate = {2006-07-15},
} @InProceedings{Freitas.etal:GeotumbaMovelMotor:2006, author = {Sergio Freitas and Ana Paula Afonso and M{\'a}rio J. Silva},
title = {Geotumba m{\'o}vel: Motor de Busca Geogr{\'a}fico para Dispositivos M{\'o}veis},
booktitle = {CSMU - Conference on Mobile and Ubiquitous System},
year = {2006},
month = {June},
project = {tumba,grease},
document = {geotumba\_movel.pdf},
} @InProceedings{Andrade.etal:IndexingStructuresFor:2006, author = {Leonardo Andrade and M{\'a}rio J. Silva},
title = {Indexing Structures for Geographic Web Retrieval},
booktitle = {CSMU, Confer{\^e}ncia sobre Sistemas M{\'o}veis e Ub{\'i}quos},
year = {2006},
month = {June},
document = {andrade-141.pdf},
} @InProceedings{Seco.etal:AComplexEvaluation:2006, author = {Nuno Seco and Diana Santos and Nuno Cardoso and Rui Vilela},
title = {A Complex Evaluation Architecture for HAREM},
booktitle = {Proceedings of the 7th International Workshop on Computational Processing of Written and Spoken Language, PROPOR 2006},
month = {13--17 May},
editor = {Renata Vieira and Paulo Quaresma and Maria das Graças Volpe Nunes and Nuno J. Mamede and Claudia Oliveira and Maria Carmelita Dias},
pages = {260--263},
year = {2006},
number = {3960},
series = {Lecture Notes in Computer Science},
month = {May},
address = {Itatiaia, Rio de Janeiro, Brasil},
publisher = {Springer},
document = {200607seco06propor.pdf},
poster = {posterSecoetalPROPOR2006.pdf},
bibdate = {2006-05-11},
project = {linguateca-xldb},
} @InProceedings{Santos.etal:HAREM:2006, author = {Diana Santos and Nuno Seco and Nuno Cardoso and Rui Vilela},
title = {HAREM: An Advanced NER Evaluation Contest for Portuguese},
editor = {Nicoletta Calzolari and Khalid Choukri and Aldo Gangemi and Bente Maegaard and Joseph Mariani and Jan Odjik and Daniel Tapias},
booktitle = {Proceedings of the 5th International Conference on Language Resources and Evaluation, LREC 2006},
publisher = {ELRA},
address = {Genoa, Italy},
month = {22--28 May},
year = 2006, pages = {1986--1991} document = {SantosSecoCardosoVilelaLREC2006.pdf},
bibdate = {2006-06-11},
project = {linguateca-xldb},
} @InProceedings{Santos.Cardoso:GoldenResource:2006, author = {Diana Santos and Nuno Cardoso},
title = {A Golden Resource for Named Entity Recognition in Portuguese},
booktitle = {Proceedings of the 7th International Workshop on Computational Processing of Written and Spoken Language, PROPOR'2006},
month = {13--17 May},
editor = {Renata Vieira and Paulo Quaresma and Maria das Graças Volpe Nunes and Nuno J. Mamede and Claudia Oliveira and Maria Carmelita Dias},
year = {2006},
number = {3960},
pages = {69--79},
series = {LNCS},
address = {Itatiaia, Rio de Janeiro, Brasil},
publisher = {Springer},
document = {200606santos06propor.pdf},
presentation = {200606santos06proporPresentation.pdf},
bibdate = {2006-06-11},
project = {linguateca-xldb},
} @InProceedings{Chaves.etal:WhatKindsOf:2006, author = {Marcirio Chaves and Diana Santos},
title = {What kinds of geographical information are there in the Portuguese Web?},
booktitle = {PROPOR 06 - 7th Workshop on Computational Processing of Written and Spoken Language},
year = {2006},
number = {3960},
series = {LNCS},
address = {Itatiaia, Rio de Janeiro, Brasil},
month = {May},
publisher = {Springer},
document = {ChavesSantosPROPOR2006\_camera\_ready.pdf},
} @InProceedings{Gomes.etal:ManagingDuplicatesIn:2006, author = {Daniel Gomes and Andr{\'e} Santos and M{\'a}rio J. Silva},
title = {Managing duplicates in a web archive},
booktitle = {Proceedings of the 21th Annual ACM Symposium on Applied Computing (ACM-SAC-06)},
year = {2006},
pages = {818-825},
month = {April},
doi = {10.1145/1141277.1141465},
url = {http://doi.acm.org/10.1145/1141277.1141465},
project = {xmlbase,tumba},
document = {gomesManaging.pdf},
presentation = {Managing Duplicates in a Web Archive3.ppt},
} @Misc{Cardoso:AvaliacaoDeSistemas:2006, author = {Nuno Cardoso},
title = {Avaliação de Sistemas de Reconhecimento de Entidades Mencionadas},
howpublished = {Presentation at the 2nd Doctoral Simposium of Linguateca},
address = {Faculty of Sciences, University of Lisbon},
month = {10--11 April},
year = {2006},
bibdate = {2006-04-10},
note = {In Portuguese},
project = {linguateca-xldb},
presentation = {200605cardoso06simposioASREM.pdf},
} @InBook{Couto.etal:MiningTheBioLiterature:2006, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {Advanced Data Mining Technologies in Bioinformatics},
chapter = {XV Mining the BioLiterature: towards automatic annotation of genes and proteins},
publisher = {Idea Group Inc},
year = {2006},
month = {March},
note = {ISBN: 1-59140-863-6},
url = {http://books.google.com/books?id=Dzhk0CEfmfsC\&pg=PA282\&dq=Mining+the+BioLiterature:+towards+automatic+annotation+of+genes+and+proteins},
project = {rebil},
abstract = {This chapter introduces the use of Text Mining in scientific literature for biological research, with a special focus on automatic gene and protein annotation. This field became recently a major topic in Bioinformatics, motivated by the opportunity brought by tapping the BioLiterature with automatic text processing software. The chapter describes the main approaches adopted and analyzes systems that have been developed for automatically annotating genes or proteins. To illustrate how text-mining tools fit in biological databases curation processes, the chapter presents a tool that assists protein annotation. Besides the promising advances of Text Mining of BioLiterature, many problems need to be addressed. This chapter presents the main open problems in using text-mining tools for automatic annotation of genes and proteins, and discusses how a more efficient integration of existing domain knowledge can improve the performance of these tools.},
document = {Couto.etal:MiningTheBioLiterature:2006\_document.pdf},
} @PhdThesis{Couto:ReBILRelatingBiological:2006, author = {Francisco Couto},
title = {ReBIL: Relating Biological Information through Literature},
school = {DI/FCUL},
year = {2006},
month = {January},
url = {http://www.di.fc.ul.pt/tech-reports/06-6.pdf},
bibdate = {2008-05-08},
project = {rebil},
presentation = {Couto:ReBILRelatingBiological:2006\_presentation.pdf},
document = {Couto:ReBILRelatingBiological:2006\_document.pdf},
} @Misc{Cardoso:MSCProposal:2006, author = {Nuno Cardoso},
title = {Avaliação de sistemas de reconhecimento de entidades mencionadas},
note = {MSc Thesis proposal. Faculdade de Engenharia da Universidade do Porto},
month = {January},
year = {2006},
project = {linguateca-xldb},
bibdate = {2006-01-30},
document = {200601cardoso06propostamestrado.pdf},
} @InProceedings{Cardoso.etal:TheXLDBGroup:2006, author = {Nuno Cardoso and Leonardo Andrade and Alberto Simões and M{\'a}rio J. Silva},
title = {The XLDB Group participation at CLEF 2005 adhoc task},
booktitle = {Acessing Multilingual Information Repositories: 6th Workshop of the Cross-Language Evaluation Forum, CLEF 2005},
year = 2006, publisher = {Springer-Verlag},
location = {Berlin / Heidelberg},
editor = {Carol Peters and Frederic Gey and Julio Gonzalo and Henning M{\"u}eller and Gareth J.F. Jones and Michael Kluck and Bernardo Magnini and Maarten de Rijke},
series = {Lecture Notes in Computer Science},
volume = {4022},
pages = {54--60},
note = {Revised Selected papers},
url = {http://www.springerlink.com/content/1j90445846x77445/},
project = {tumba},
document = {200610cardoso05adhocSpringer.pdf},
bibdate = {2006-06-01},
} @InProceedings{Santos.etal:PortugueseAtCLEF:2006, author = {Diana Santos and Nuno Cardoso},
title = {Portuguese at CLEF},
booktitle = {Acessing Multilingual Information Repositories: 6th Workshop of the Cross-Language Evaluation Forum, CLEF 2005},
year = {006, publisher},
location = {Berlin / Heidelberg},
editor = {Carol Peters and Frederic Gey and Julio Gonzalo and Henning M{\"u}eller and Gareth J.F. Jones and Michael Kluck and Bernardo Magnini and Maarten de Rijke},
series = {Lecture Notes in Computer Science},
volume = {4022},
pages = {1007--1010},
note = {Short version of working notes paper},
url = {http://www.springerlink.com/content/n7557914427r0048/},
project = {linguateca-xldb},
bibdate = {2006-06-10},
document = {Santos.etal:PortugueseAtCLEF:2006\_document.pdf},
} @InProceedings{Cardoso.etal:TheXLDBGroup:Springer:2006, author = {Nuno Cardoso and Bruno Martins and Leonardo Andrade and Marcirio Silveira Chaves and M{\'a}rio J. Silva},
title = {The XLDB Group at GeoCLEF 2005},
booktitle = {Acessing Multilingual Information Repositories: 6th Workshop of the Cross-Language Evaluation Forum, CLEF 2005},
year = 2006, publisher = {Springer-Verlag},
location = {Berlin / Heidelberg},
editor = {Carol Peters and Frederic Gey and Julio Gonzalo and Henning M{\"u}eller and Gareth J.F. Jones and Michael Kluck and Bernardo Magnini and Maarten de Rijke},
series = {Lecture Notes in Computer Science},
volume = {4022},
pages = {997--1006},
note = {Short version of working notes paper},
url = {http://www.springerlink.com/content/e06k415qg4m825p2/} bibdate = {2008-05-10},
document = {200611cardoso05geoclefSpringer.pdf},
project = {grease, tumba},
} @TechReport{Gomes.etal:OnURLAnd:2005, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {On URL and content persistence},
institution = {University of Lisbon, Faculty of Sciences},
year = {2005},
number = {TR 05-21},
month = {December},
url = {http://www.di.fc.ul.pt/tech-reports/05-21.pdf},
document = {urlPersistenceRT.pdf},
} @TechReport{Couto.etal:GOAnnotatorLinkingElectronic:2005, author = {Francisco Couto and M{\'a}rio J. Silva and V. Lee and E. Dimmer and E. Camon and R. Apweiler and H. Kirsch and D. Rebholz-Schuhmann},
title = {GOAnnotator: linking electronic protein GO annotation to evidence text},
institution = {FCUL},
year = {2005},
number = {DI/FCUL TR 5-25},
month = {December},
url = {http://www.di.fc.ul.pt/tech-reports/05-25.pdf},
project = {rebil},
document = {05-25.pdf},
} @TechReport{Couto.etal:ValidationOfAutomated:2005, author = {Francisco Couto and M{\'a}rio J. Silva and Pedro M. Coutinho},
title = {Validation of Automated Protein Annotation},
institution = {FCUL},
year = {2005},
number = {TR 5-24},
month = {November},
url = {http://www.di.fc.ul.pt/tech-reports/05-24.pdf},
project = {rebil},
document = {05-24.pdf},
} @InProceedings{Carmo.etal:FilteringMechanismsFor:2005, author = {Maria Beatriz Carmo and Sergio Freitas and Ana Paula Afonso and Ana Paula Cl{\'a}udio},
title = {Filtering Mechanisms for the Visualization of Geo-referenced Information},
booktitle = {GIR'05 - Second International Workshop on Geographic Information Retrieval (held at ACM CIKM 2005)},
year = {2005},
month = {November},
project = {geovis},
document = {s02\_carmo.pdf},
} @InProceedings{Martins.etal:AGraph-RankingAlgorithm:2005, author = {Bruno Martins and M{\'a}rio J. Silva},
title = {A Graph-Ranking Algorithm for Geo-Referencing Documents},
booktitle = {Proceedings of ICDM-05, the 5th IEEE International Conference on Data Mining},
year = {2005},
month = {November},
pages = {41-744},
publisher = {EEE},
doi = {10.1109/ICDM.2005.6},
document = {graph-rank.pdf},
} @InProceedings{Carreira.etal:ExtendingRelationalAlgebra:2005, author = {Paulo Carreira and Helena Galhardas and Ant{\'o}nia Lopes and João Pereira},
title = {Extending Relational Algebra to express one-to-many data transformation},
booktitle = {Brazilian Symposium on Databases, SBBD 05},
year = {2005},
month = {October},
url = {http://www.sbbd-sbes2005.ufu.br/arquivos/artigo-10-CarreiraGalhardas.pdf},
} @InProceedings{Couto.etal:SemanticSimilarityOver:2005, author = {Francisco Couto and M{\'a}rio J. Silva and Pedro Coutinho},
title = {Semantic Similarity over the Gene Ontology: Family Correlation and Selecting Disjunctive Ancestors},
booktitle = {ACM CIKM - Conference in Information and Knowledge Management},
year = {2005},
month = {October},
url = {http://doi.acm.org/10.1145/1099554.1099658},
project = {boa},
document = {ep323-couto.pdf},
presentation = {cikm2005poster.ppt},
} @InProceedings{Martins.etal:IndexingAndRanking:2005, author = {Bruno Martins and M{\'a}rio J. Silva and Leonardo Andrade},
title = {Indexing and Ranking in Geo-IR Systems},
booktitle = {Proceedings of the Workshop on Geographic Information Retrieval at CIKM 2005},
year = {2005},
month = {October},
document = {spatial.pdf},
} @InProceedings{Martins.etal:ChallengesAndResources:2005, author = {Bruno Martins and M{\'a}rio J. Silva and Marcirio Chaves},
title = {Challenges and Resources for Evaluating Geographical IR},
booktitle = {Proceedings of the Workshop on Geographic Information Retrieval at CIKM 2005},
year = {2005},
month = {October},
document = {grease-evaluation.pdf},
} @InProceedings{Chaves.etal:AGeographicKnowledge:2005, author = {Marcirio Chaves and M{\'a}rio J. Silva and Bruno Martins},
title = {A Geographic Knowledge Base for Semantic Web Applications},
booktitle = {20th Brazilian Symposium on Databases - SBBD},
pages = {40-54},
year = {2005},
address = {Uberl{\^a}ndia, Minas Gerais, Brazil},
month = {October},
url = {http://www.sbbd-sbes2005.ufu.br/arquivos/artigo-03-ChavesSilva.pdf},
isbn = {85-7669-029-2},
project = {grease, geonet, geonetpt01},
document = {camera\_ready\_sbbd05.pdf},
presentation = {sbbd\_2005.ppt},
} @InProceedings{Carmo.etal:VisualizacaoPersonalizadaDe:2005, author = {Maria Beatriz Carmo and Sergio Freitas and Ana Paula Afonso and Ana Paula Cl{\'a}udio},
title = {Visualização Personalizada de Dados Geo-referenciados},
booktitle = {Encontro Nacional de Visualização Cient{\'i}fica (ENVC 05)},
year = {2005},
month = {September},
project = {geovis},
bibdate = {2008-04-07},
} @InProceedings{Freitas.etal:ConcepcaoEDesenvolvimento:2005, author = {Sergio Freitas and Ana Paula Afonso and M{\'a}rio J. Silva},
title = {Concepção e Desenvolvimento de Interfaces para o Motor de Busca Geogr{\'a}fico GeoTumba!},
booktitle = {Encontro Nacional de Visualização Cient{\'i}fica (ENVC 05)},
year = {2005},
month = {September},
project = {grease},
document = {envc05\_sergio\_et\_al.pdf},
presentation = {PosterENVC.ppt},
} @InProceedings{Santos.etal:PortugueseAtCLEF:2005, author = {Diana Santos and Nuno Cardoso},
title = {Portuguese at CLEF 2005: Reflections and Challenges},
booktitle = {Cross Language Evaluation Forum: Working Notes for the 6th CLEF Workshop},
editor = {Carol Peters},
year = {2005},
address = {Vienna, Austria},
month = {21-23 September},
url = {http://www.clef-campaign.org/2005/working\_notes/CLEF2005WN-Contents.html},
note = {Republished in 2006 by Springer in volume 4022 of Lecture Notes in Computer Science, pages 1007-1010},
document = {200504santos05portuguese.pdf},
project = {tumba, linguateca-xldb},
bibdate = {2005-09-23},
} @InProceedings{Martins.etal:TheWebCATFramework:2005, author = {Bruno Martins and M{\'a}rio J. Silva},
title = {The WebCAT Framework : Automatic Generation of Meta-Data for Web Resources},
booktitle = {2005 IEEE / WIC / ACM International Conference on Web Intelligence (WI 2005), 19-22 September 2005, Compiegne, France},
publisher = {IEEE Computer Society},
year = {2005},
isbn = {0-7695-2415-X},
pages = {236-242},
month = {September},
doi = {10.1109/WI.2005.146},
url = {http://dx.doi.org/10.1109/WI.2005.146},
projects = {grease, tumba},
document = {parser.pdf},
presentation = {bmartins-webcat-wi2005.ppt},
} @InProceedings{Cardoso.etal:XLDBatCLEF2005adhoc:2005, author = {Nuno Cardoso and Leonardo Andrade and Alberto Simões and M{\'a}rio J. Silva},
title = {The XLDB group participation at the CLEF2005 ad-hoc task},
booktitle = {Cross Language Evaluation Forum: Working Notes for the 6th CLEF Workshop},
year = {2005},
editor = {Carol Peters},
address = {Vienna, Austria},
month = {21-23 September},
url = {http://www.springerlink.com/content/e06k415qg4m825p2/},
note = {Republished in 2006 by Springer in volume 4022 of Lecture Notes in Computer Science, pp. 54-60},
project = {grease,tumba},
bibdate = {2005-09-23},
poster = {200502cardoso05CLEF2005adhocPoster.pdf},
document = {200502cardoso05CLEF2005adhoc.pdf},
} @InProceedings{Cardoso.etal:XLDBatGeoCLEF:2005, author = {Nuno Cardoso and Bruno Martins and Marcirio Chaves and Leonardo Andrade and M{\'a}rio J. Silva},
title = {The XLDB Group at GeoCLEF 2005},
editor = {Carol Peters},
booktitle = {Cross Language Evaluation Forum: Working Notes for the 6th CLEF Workshop},
day = {21-23} month },
year = {2005},
address = {Vienna, Austria},
url = {http://www.clef-campaign.org/2005/working\_notes/CLEF2005WN-Contents.html},
note = {Republished in 2006 by Springer in volume 4022 of Lecture Notes in Computer Science, pp. 997-1006},
project = {tumba, grease},
bibdate = {2005-09-23},
presentation = {200503cardoso05geoclefPresentation.ppt},
poster = {200503cardoso05geoclefPoster.pdf},
document = {200503cardoso05geoclef.pdf},
} @InProceedings{Carreira.etal:DataMapperAn:2005, author = {Paulo Carreira and Helena Galhardas and Ant{\'o}nia Lopes and João Pereira},
title = {Data Mapper: An operator for expressing one-to-many data transformations},
booktitle = {7th Intl Conf. on Data Warehousing and Knowledge Discovery, DaWaK 05},
year = {2005},
month = {August},
} @Article{Gomes.etal:CharacterizingANational:2005, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {Characterizing a National Community Web},
journal = {ACM Transactions on Internet Technology (TOIT)},
year = {2005},
pages = {508-53},
month = {August},
document = {p508-gomes.pdf (1).pdf},
url = {http://doi.acm.org/10.1145/1084772.1084775},
} @Article{Falcao.etal:DesigningDecisionSupport:2005, author = {Andre O. Falcao and Jos{\'e} G. Borges},
title = {Designing decision support tools for Mediterranean forest ecosystems management: a case study in Portugal},
journal = {Annals of Forest Science},
year = {2005},
volume = {62},
number = {7},
month = {July},
} @TechReport{Chaves.etal:GKB-Geographic:2005, author = {Marcirio Chaves and M{\'a}rio J. Silva and Bruno Martins},
title = {GKB - Geographic Knowledge Base},
institution = {FCUL},
year = {2005},
number = {TR 05-12},
month = {July},
url = {http://www.di.fc.ul.pt/tech-reports/05-12.pdf},
project = {grease, geonet, geonetpt01},
} @InProceedings{Jain.etal:LiteratureBasedFunctional:2005, author = {Pooja Jain and Francisco Couto and M{\'a}rio J. Silva and Jorg D. Becker},
title = {Literature Based Functional Annotation of Genes},
booktitle = {BKDB2005 - Bioinformatics: Knowledge Discovery in Biology},
year = {2005},
month = {June},
url = {http://xldb.di.fc.ul.pt/bkdb2005/proceedings/oral/BKDB2005\_012.pdf},
isbn = {972-9348-12-10},
project = {rebil},
document ={BKDB2005\_012.pdf},
presentation = {BKDB2005\_pjain.pdf},
} @Book{Couto.etal:BKDB2005-Bioinformatics:2005, author = {Francisco Couto and M{\'a}rio J. Silva and Pedro Fernandes},
title = {Proceedings of the Bioinformatics: Knowledge Discovery in Biology Workshop (BKDB 2005)},
publisher = {Workshop Proccedings},
year = {2005},
isbn = {972-9348-12-10},
month = {June},
url = {http://hdl.handle.net/10455/3156},
document = {proceedings.pdf},
} @InProceedings{Freitas.etal:APersonalizedVisualization:2005, author = {Sergio Freitas and Maria Beatriz Carmo and Ana Paula Afonso},
title = {A Personalized Visualization Tool for Geo-referenced Information},
booktitle = {ACM SIGCSE - Tenth Annual Conference on Inovation and Technology in Computer Science Education (ITiCSE 05)},
year = {2005},
month = {June},
project = {grease, geovis},
document = {p398-freitasACM-DL.pdf},
presentation = {PosterITiCSE-apresentação.ppt},
} @Article{Couto.etal:FindingGenomicOntology:2005, author = {Francisco Couto and M{\'a}rio J. Silva and Pedro Coutinho},
title = {Finding Genomic Ontology Terms in Text using Evidence Content},
journal = {BMC Bioinformatics Journal},
volume = {6},
number = {S1},
pages = {S21},
year = {2005},
month = {April},
doi = {10.1186/1471-2105-6-S1-S21},
project = {rebil},
document = {http://www.biomedcentral.com/content/pdf/1471-2105-6-S1-S21.pdf},
} @InProceedings{Martins.etal:LanguageIdentificationIn:2005, author = {Bruno Martins and M{\'a}rio J. Silva},
title = {Language Identification in Web Pages},
booktitle = {ACM-SAC-DE, 20th ACM Symposium on Applied Computing, Document Engeneering Track},
pages = {764--768},
year = {2005},
month = {April},
project = {grease},
doi = {10.1145/1066677.1066852},
url = {http://doi.acm.org/10.1145/1066677.1066852},
document = {ngram-article.pdf},
presentation = {ngram-article.ppt},
} @Article{Costa.etal:IndexacaoDistribuidaDe:2005, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Indexação Distribu{\'i}da de Colecções Web de Larga Escala},
journal = {IEEE Latin America Transactions},
year = {2005},
url = {http://www.ewh.ieee.org/reg/9/etrans/Marzo2005/paper33.pdf},
month = {March},
note = {Special JISBD issue},
project = {tumba,xmlbase},
} @InProceedings{Martins.etal:AssigningGeographicalScopes:2005, author = {Bruno Martins and Marcirio Chaves and M{\'a}rio J. Silva},
title = {Assigning Geographical Scopes To Web Pages},
booktitle = {ECIR-2005 - 27th European Conference on Information Retrieval},
year = {2005},
month = {March},
project = {grease},
note = {Poster Paper},
presentation = {posterScopes.ppt},
document = {ecir-geo-class.pdf},
} @Article{Rebholz-Schuhmann.etal:FactsFromText:2005, author = {D. Rebholz-Schuhmann and H. Kirsch and Francisco Couto},
title = {Facts from text: Is Text Mining ready to deliver?},
journal = {PLoS Biology Journal},
volume = {3},
number = {2},
pages = {e65},
year = {2005},
month = {February},
doi = {10.1371/journal.pbio.0030065},
project = {rebil},
document = {dietrich2005.pdf},
} @TechReport{Carreira.etal:ExtendingTheRelational:2005, author = {Paulo Carreira and Helena Galhardas and Ant{\'o}nia Lopes and João Pereira},
title = {Extending the Relational Algebra with the Mapper Operator},
institution = {University of Lisbon, Faculty of Sciences},
year = {2005},
month = {January},
number = {TR 05-02},
url = {http://www.di.fc.ul.pt/tech-reports/05-2.pdf},
} @TechReport{Jul:CALiMACO:2005, author = {Josefa Jul},
title = {CAL{\'i}MACO, um reposit{\'o}rio de documentos biol{\'o}gicos},
institution = {University of Lisbon, Faculty of Sciences},
year = {2005},
document = {relatorio.pdf},
} @MastersThesis{Costa:SIDRAAFlexible:2004, author = {Miguel Costa},
title = {SIDRA: a Flexible Web Search System},
month = {November},
school = {University of Lisbon, Faculty of Sciences},
year = {2004},
url = {http://www.di.fc.ul.pt/tech-reports/04-17.pdf},
note = {Also available as Technical Report DI/FCUL TR 4-17},
project = {xmlbase, tumba},
bibdate = {2008-05-08},
} @TechReport{Gomes.etal:WebstoreAManager:2004, author = {Daniel Gomes and Andr{\'e} Santos and M{\'a}rio J. Silva},
title = {Webstore: A Manager for Incremental Storage of Contents},
institution = {University of Lisbon, Faculty of Sciences},
year = {2004},
month = {November},
url = {http://www.di.fc.ul.pt/tech-reports/04-15.pdf},
number = {TR DI/FCUL 4-15},
bibdate = {2008-05-08},
document = {webstore.pdf},
} @InProceedings{Costa.etal:DistributedIndexCreation:2004, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Distributed Index Creation of Large Scale Web Collections in the Sidra System},
booktitle = {JISBD'2004, IX Jornadas de Ingenier{\'i}a del Software y Bases de Datos},
year = {2004},
month = {November},
address = {M{\'a}laga},
url = {http://jisbd2004.lcc.uma.es/},
project = {tumba, xmlbase},
bibdate = {2008-05-08},
document = {jisbd2004.pdf},
presentation = {jisbd-sidra-2004.pdf},
} @InProceedings{SantosEtAtl.Linugateca.IBERAMIA2004, author = {Diana Santos and Alberto Simões and Ana Frankenberg-Garcia and Ana Pinto and Anabela Barreiro and Belinda Maia and Cristina Mota and D{\'e}bora Oliveira and Eckhard Bick and Elisabete Ranchhod and Jos{\'e} João Dias de Almeida and Lu{\'i}s Miguel Cabral and Lu{\'i}s Costa and Lu{\'i}s Sarmento and Marcirio Chaves and Nuno Cardoso and Paulo Rocha and Rachel Aires and Ros{\'a}rio Silva and Rui Vilela and Susana Afonso},
title = {Linguateca: um centro de recursos distribu{\'i}do para o processamento computacional da l{\'i}ngua portuguesa},
booktitle = {Proceedings of the International Workshop \textquotedblleft{}Taller de Herramientas y Recursos Lingu{\'i}sticos para el Español y el Portugu{\'e}s\textquotedblright{},
IX Iberoamerican Conference on Artificial Intelligence, IBERAMIA 2004},
editor = {Olac Fuentes Ch{\'a}vez and Guillermo De Ita Luna and Mauricio Osorio Galindo},
page = {147-154},
year = {2004},
month = {November},
address = {Puebla, Mexico},
project = {linguateca-xldb},
document = {200403santos04linguateca.pdf},
note = {In Portuguese},
bibdate = {2004-11-01},
} @MastersThesis{Martins:Inter-documentSimilarityIn:2004, author = {Bruno Martins},
title = {Inter-document similarity in Web Searches},
month = {October},
school = {University of Lisbon, Faculty of Sciences},
year = {2004},
note = {Also available as Technical Report DI/FCUL TR 4-11},
bibdate = {2008-05-08},
document = {http://www.di.fc.ul.pt/tech-reports/04-11.pdf},
} @Article{Afonso.etal:DynamicInformationDissemination:2004, author = {Ana Paula Afonso and M{\'a}rio J. Silva},
title = {Dynamic Information Dissemination to Mobile Users},
journal = {ACM Mobile Networks and Applications (MONET)},
volume = {9},
number = {5},
year = {2004},
pages = {529-536},
month = {October},
doi = {10.1145/1027347.1027355},
url = {http://doi.acm.org/10.1145/1027347.1027355},
bibdate = {2008-05-08},
} @InProceedings{Martins.etal:SpellingCorrectionFor:2004, author = {Bruno Martins and M{\'a}rio J. Silva},
title = {Spelling Correction for Search Engine Queries},
booktitle = {Advances in Natural Language Processing, 4th International Conference, EsTAL 2004, Alicante, Spain, October 20-22, 2004, Proceedings},
year = {2004},
month = {October},
address = {Alicante, Spain},
pages = {372-383},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
volume = {3230},
bibdate = {2008-05-08},
isbn = {3-540-23498-5},
project = {grease},
document = {spellcheck.pdf},
} @InProceedings{Costa.etal:OptimizingRankingCalculation:2004, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Optimizing Ranking Calculation in Web Search Engines: a Case Study},
booktitle = {SBBD 2004, 19º Simp{\'o}sio Brasileiro de Banco de Dados},
year = {2004},
month = {October},
pages = {298-308},
isbn = {85-7669-009-8},
address = {Brasilia},
url = {http://www.sbbd.unb.br/},
project = {tumba, xmlbase},
bibdate = {2008-05-08},
document = {sbbd2004.pdf},
} @InProceedings{Cardoso.etal:TheXLDBGroup:2004, author = {Nuno Cardoso and M{\'a}rio J. Silva and Miguel Costa},
title = {The XLDB Group at CLEF 2004},
booktitle = {Cross Language Evaluation Forum: Working Notes for the CLEF 2004 Workshop},
year = {2004},
page = {183-191},
month = {15-17 September},
editor = {Carol Peters and Francesca Borri},
address = {Bath, England},
url = {http://www.clef-campaign.org/2004/working\_notes/CLEF2004WN-Contents.html},
note = {Republished in 2005 by Springer in volume 3491 of Lecture Notes in Computer Science series, pp. 245-252},
bibdate = {2004-09-11},
project = {grease,tumba},
document = {200402cardoso04clefadhoc.pdf},
poster = {200402cardoso04clefadhocPoster.pdf},
} @InProceedings{Noronha.etal:UsingTheSemantic:2004, author = {Norman Noronha and M{\'a}rio J. Silva},
title = {Using the Semantic Web for Web Searches},
booktitle = {INTERACÇÃO 2004 - 1ª Confer{\^e}ncia Nacional em Interacção Pessoa-M{\'a}quina},
year = {2004},
month = {July},
address = {Lisbon, Portugal},
paper = {NormanPaperInteraccao2004.pdf},
bibdate = {2008-05-08},
presentation = {NormanInteraccao2004.ppt},
} @InProceedings{Carreira.etal:ExecutionOfData:2004, author = {Paulo Carreira and Helena Galhardas},
title = {Execution of Data Mappers},
booktitle = {ACM Int\textquoteright{}l Data Quality Workshop IQIS 04 (held at ACM SIGMOD\textquoteright{}04)},
year = {2004},
month = {June},
url = {http://portal.acm.org/citation.cfm?id=1012453.1012455\&coll=Portal\&dl=GUIDE\&CFID=26981710\&CFTOKEN=66074875},
bibdate = {2008-05-08},
} @InProceedings{Carreira.etal:EfficientDevelopmentOf:2004, author = {Paulo Carreira and Helena Galhardas},
title = {Efficient development of data migration transformations},
booktitle = {ACM SIGMOD 04 Int\textquoteright{}l Conference on the Management of Data},
year = {2004},
month = {June},
url = {http://portal.acm.org/citation.cfm?id=1007568.1007692\&coll=Portal\&dl=GUIDE\&CFID=26981710\&CFTOKEN=66074875},
note = {Demo Paper},
bibdate = {2008-05-08},
} @MastersThesis{Jain:GeneFunctionPrediction:2004, author = {Pooja Jain},
title = {Gene Function Prediction by Mining Biomedical Literature},
school = {University of Lisbon, Faculty of Sciences},
month = {June},
year = {2004},
optdocument = {techreport04-12.pdf},
url = {http://www.di.fc.ul.pt/tech-reports/04-12.pdf},
note = {Also available as Technical Report DI/FCUL TR 4-12},
project = {rebil},
bibdate = {2004-05-08},
presentation = {Pooja\_Sept\_29\_04\_FCUL.ppt},
} @InProceedings{Silva.etal:AddingGeographicScopes:2004, author = {M{\'a}rio J. Silva and Bruno Martins and Marcirio Chaves and Nuno Cardoso and Ana Paula Afonso},
title = {Adding Geographic Scopes to Web Resources},
booktitle = {ACM SIGIR 2004 Workshop on Geographic Information Retrieval},
year = {2004},
month = {June},
address = {Sheffield, UK},
project = {grease},
bibdate = {2004-06-01},
document = {acm-sigir04-geoir-scopes-short2.pdf},
presentation = {sigir04-wkshop-geoscpoes.pdf},
} @MastersThesis{Noronha:RequestValidatingSemantic:2004, author = {Norman Noronha},
title = {Request: Validating Semantic Searches},
month = {May},
school = {University of Lisbon, Faculty of Sciences},
year = {2004},
url = {http://www.di.fc.ul.pt/tech-reports/04-9.pdf},
note = {Also available as Technical Report DI/FCUL TR 4-9},
bibdate = {2008-05-08},
presentation = {NormanMastersPresentation.ppt},
} @InProceedings{Martins.etal:AStatisticalStudy:2004, author = {Bruno Martins and M{\'a}rio J. Silva},
title = {A Statistical Study of the Tumba! Corpus},
booktitle = {Advances in Natural Language Processing, 4th International Conference, EsTAL 2004, Alicante, Spain, October 20-22, 2004, Proceedings},
year = {2004},
pages = {384-394},
note = {Also available as University of Lisbon, Faculty of Sciences, Technical Report DI/FCUL TR 4-4},
bibdate = {2008-05-08},
project = {tumba, wpt} document = {http://www.di.fc.ul.pt/tech-reports/04-4.pdf},
} @PhdThesis{Afonso:ContribuicoesMetodologicasPara:2004, author = {Ana Paula Afonso},
title = {Contribuições Metodol{\'o}gicas para o Desenvolvimento de Assistentes de Informação Personalizada},
school = {University of Lisbon, Faculty of Sciences},
year = {2004},
month = {May},
note = {Also available as Technical Report DI/FCUL TR 4-3},
bibdate = {2008-05-08},
document = {http://www.di.fc.ul.pt/tech-reports/04-3.pdf},
} @InProceedings{Couto.etal:FiGOFindingGO:2004, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {FiGO: Finding GO terms in unstructured text},
booktitle = {Critical Assessment of Information Extraction systems in Biology (BioCreative)},
year = {2004},
month = {March},
address = {Granada, Spain},
url = {http://www.pdg.cnb.uam.es/BioLink/workshop\_BioCreative\_04/},
bibdate = {2008-05-08},
project = {rebil},
document = {biocreative04paper.pdf},
presentation = {biocreative04ppt.pdf},
} @InProceedings{Couto.etal:ClassifyingBiomedicalArticles:2004, author = {Francisco Couto and Bruno Martins and M{\'a}rio J. Silva},
title = {Classifying Biological Articles using Web Resources},
booktitle = {19th ACM Symposium on Applied Computing (SAC), Bioinformatics Track, Nicosia, Cyprus},
url = {http://doi.acm.org/10.1145/967900.967925},
year = {2004},
pages = {111-115},
month = {March},
project = {rebil},
doi = {10.1145/967900.967925},
bibdate = {2008-05-08},
document = {sac04paper.pdf},
presentation = {sac04ppt.pdf},
} @InProceedings{CardosoEtAt.CLEFadhoc2004.revised, author = {Nuno Cardoso and M{\'a}rio J. Silva and Miguel Costa},
title = {The XLDB Group at CLEF 2004},
editor = {Carol Peters and Paul Clough and Julio Gonzalo and Gareth Jones and Michael Kluck and Bernardo Magnini},
volume = {3491},
series = {Lecture Notes in Computer Science},
pages = {245-252},
note = {Reviewed version of 2004 working notes},
publisher = {Springer},
project = {tumba},
document = {200501cardoso04clefadhocSpringer.pdf},
url = {http://www.springerlink.com/content/1cr53a2eujcxrfj3/},
bibdate = {2005-01-01},
} @InProceedings{Martins.etal:WebInformationRetrieval:2003, author = {Bruno Martins and M{\'a}rio J. Silva},
title = {Web Information Retrieval with Result Set Clustering},
booktitle = {NLTR 2003 - Natural Language and Text Retrieval Workshop at EPIA'03},
year = {2003},
month = {December},
document = {nltr2003.pdf},
url = {http://www.di.uevora.pt/epia03/},
} @InProceedings{Silva:OPapelDa:2003, author = {M{\'a}rio J. Silva},
title = {O Papel da Meta-informação na Estrat{\'e}gia de Comunicação da Administração P{\'u}blica},
booktitle = {1o. Congresso Nacional da Administração P{\'u}blica: os Vectores da Mudança},
year = {2003},
address = {Lisboa},
month = {November},
document = {meta-data-adm-publica.pdf},
url = {http://www.ina.pt/eventos/1congresso},
} @InProceedings{Silva:TheCaseFor:2003, author = {M{\'a}rio J. Silva},
title = {The Case for a Portuguese Web Search Engine},
booktitle = {IADIS International Conference WWW Internet 2003},
year = {2003},
month = {November},
url = {http://www.iadis.org/icwi2003/},
project = {tumba, wpt03, wpt, wpt05} document = {tumba-icwi2003-final.pdf},
} @InProceedings{Silva:SearchingAndArchiving:2003, author = {M{\'a}rio J. Silva},
title = {Searching and Archiving the Web with Tumba!},
booktitle = {CAPSI 2003 - 4a. Confer{\^e}ncia da Associação Portuguesa de Sistemas de Informação},
year = {2003},
month = {November},
document = {tumba-search+archive-capsi-final.pdf},
url = {http://capsi2003.upt.pt/},
} @InProceedings{Costa.etal:SidraAFlexible:2003, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Sidra: a Flexible Distributed Indexing and Ranking Architecture for Web Search},
booktitle = {JISBD 2003 - VIII Jornadas de Ingenier{\'i}a del Software y Bases de Datos},
year = {2003},
address = {Alicante, Spain},
month = {November},
project = {xmlbase, tumba},
url = {http://gplsi.dlsi.ua.es/congresos/jisbd03/},
document = {sidraJISBD2003.pdf},
presentation = {jisbd-sidra.ppt},
} @InProceedings{Couto.etal:ReBILRelatingBiological:2003a, author = {Francisco Couto and Pooja Jain and M{\'a}rio J. Silva},
title = {ReBIL: Relating Biological Information through Literature},
booktitle = {1st Annual Meeting of Portuguese Proteomic Network - ProCura: Functional Genomics And Proteomics},
year = {2003},
address = {Inst. Nacional de Sa{\'u}de Dr Ricardo Jorge, Lisboa},
month = {November},
image = {procura03poster.jpg},
url = {http://www.procura-portugal.org/},
project = {rebil},
document = {procura03abstract.pdf},
} @TechReport{Couto.etal:ImplementationOfA:2003, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {Implementation of a Functional Semantic Similarity Measure between Gene-Products},
institution = {FCUL},
year = {2003},
number = {DI/FCUL TR 3-29},
month = {November},
url = {http://www.di.fc.ul.pt/tech-reports/03-29.pdf},
project = {boa},
document = {techreport03-29.pdf},
} @Article{Couto.etal:ProFALPROteinFunctional:2003, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {ProFAL: PROtein Functional Annotation through Literature},
journal = {JISBD 2003 - VIII Jornadas de Ingenier{\'i}a del Software y Bases de Datos},
year = {2003},
address = {Alicante, Spain},
url = {http://gplsi.dlsi.ua.es/congresos/jisbd03/},
month = {November},
project = {rebil},
document = {jisbd03paper.pdf},
presentation = {jisbd03ppt.pdf},
} @InProceedings{Carreira.etal:EfficientDevelopmentOf:2003, author = {Paulo Carreira and Helena Galhardas},
title = {Efficient development of data migration transformations},
booktitle = {Semantic Integration Workshop},
year = {2003},
month = {October},
note = {In conjunction with The Second Int'l Semantic Web Conference and Demo Paper},
} @InProceedings{Couto.etal:Bioinformatica-Exploracao:2003, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {Bioinform{\'a}tica - Exploração da Informação},
year = {2003},
editor = {centroatlantico.pt Magazine},
number = {3},
month = {October},
image = {capa\_revista500.jpg},
document = {CentroAtlantico.pdf},
url = {http://www.centroatl.pt/revista/},
} @InProceedings{Couto.etal:ImprovingInformationExtraction:2003, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {Improving Information Extraction through Biological Correlation},
booktitle = {Data Mining and Text Mining for Bioinformatics Workshop at the ECML/PKDD2003},
year = {2003},
address = {Dubrovnik-Cavtat, Croatia},
month = {September},
url = {http://kd.cs.uni-magdeburg.de/ws03.html},
project = {rebil},
document = {pkdd03paper.pdf},
presentation = {pkdd03ppt.pdf},
} @InProceedings{Gomes.etal:ACharacterizationOf:2003, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {A Characterization of the Portuguese Web},
booktitle = {3rd ECDL Workshop on Web Archives},
year = {2003},
address = {Trondheim, Norway},
month = {August},
url = {http://bibnum.bnf.fr/ecdl/2003/proceedings.php\%3Ff\%3Dgomes},
project = {wpt, tumba} document = {gomes03charactFinal2.pdf},
presentation = {webarchive2003.ppt},
} @TechReport{Couto.etal:ClassifyingBiomedicalArticles:2003, author = {Francisco Couto and Bruno Martins and M{\'a}rio J. Silva},
title = {Classifying Biomedical Articles using Web Resources: application to KDD Cup 02},
institution = {FCUL},
year = {2003},
number = {DI/FCUL TR 3-24},
month = {July},
url = {http://www.di.fc.ul.pt/tech-reports/03-24.pdf},
project = {rebil},
document = {techreport03-24.pdf},
} @InProceedings{Couto.etal:CuratingExtractedInformation:2003, author = {Francisco Couto and M{\'a}rio J. Silva},
title = {Curating Extracted Information through the Correlation between Structure and Function},
booktitle = {Third meeting of the special interest group on Text Mining at the Intelligent Systems for Molecular Biology (ISMB)},
year = {2003},
address = {Brisbane, Australia},
month = {June},
url = {http://www.pdg.cnb.uam.es/BioLink/SpecialInterestTextMining/},
project = {rebil},
document = {ismb03paper.pdf},
presentation = {ismb03ppt.pdf},
} @InProceedings{Couto.etal:ReBILRelatingBiological:2003, author = {Francisco Couto and M{\'a}rio J. Silva and Pedro M Coutinho},
title = {ReBIL: Relating Biological Information through Literature},
booktitle = {Poster at Intelligent Systems for Molecular Biology (ISMB)},
year = {2003},
address = {Brisbane, Australia},
month = {June},
image = {ismb03posterphoto.jpg},
url = {http://www.iscb.org/ismb2003/},
project = {rebil},
document = {Couto.etal:ReBILRelatingBiological:2003\_document.pdf},
poster = {Couto.etal:ReBILRelatingBiological:2003\_poster.jpg},
} @TechReport{Gomes.etal:CollectingStatisticsAbout:2003, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {Collecting Statistics about the Portuguese Web},
institution = {University of Lisbon, Faculty of Sciences},
year = {2003},
number = {TR 03-10},
month = {June},
url = {http://www.di.fc.ul.pt/tech-reports/03-10.pdf},
document = {gomes03colectTR.pdf},
} @InProceedings{Silva:AnInitialProposal:2003, author = {M{\'a}rio J. Silva},
title = {An initial proposal for cooperative evaluation on information retrieval in Portuguese},
booktitle = {Propor\'2003 -- 6th Workshop on Computational Processing of the Portuguese Language - Written and Spoken},
year = {2003},
address = {Faro, Portugal},
month = {June},
url = {http://www.ualg.pt/propor/EN\_propor\_main\_page.htm},
} @InProceedings{Borbinha.etal:InternetSearchEngines:2003, author = {Jos{\'e} Borbinha and Nuno Freire and M{\'a}rio J. Silva and Bruno Martins},
title = {Internet Search Engines and OPACs: Getting the best of two worlds},
booktitle = {ElPub 2003 - ICCC/IFIP 7th International Conference on Electronic Publishing},
year = {2003},
address = {Guimarães, Portugal},
month = {June},
document = {ElPub2003Paper49.pdf},
} @MastersThesis{Campos:VersusAWeb:2003, author = {João P. Campos},
title = {Versus: a Web Data Repository with Time Support},
school = {University of Lisbon, Faculty of Sciences},
year = {2003},
month = {May},
note = {Also available as Technical Report DI/FCUL 03-8},
url = {http://www.di.fc.ul.pt/tech-reports/03-8.pdf},
project = {xmlbase},
} @TechReport{Silva:TheCaseFor:2003a, author = {M{\'a}rio J. Silva},
title = {The Case for a Portuguese Web Search Engine},
institution = {University of Lisbon, Faculty of Sciences},
year = {2003},
number = {TR-03-3},
month = {March},
url = {http://www.di.fc.ul.pt/tech-reports/03-3.pdf},
document = {03-3.pdf},
} @TechReport{Silva.etal:AvaliacaoDeSistemas:2003, author = {M{\'a}rio J. Silva and Miguel Costa and Bruno Martins},
title = {Avaliação de Sistemas de Recuperação de Informação da Web em Portugu{\^e}s: Uma Proposta Inicial {\`a} Comunidade},
institution = {University of Lisbon, Faculty of Sciences},
year = {2003},
number = {TR-03-11},
month = {March},
url = {http://www.di.fc.ul.pt/tech-reports/03-11.pdf},
document = {03-11.pdf},
} @InProceedings{Silva.etal:GestInf-Um:2002, author = {M{\'a}rio J. Silva and João P. Campos and Nuno Maria and Pedro Gaspar},
title = {GestInf - Um Reposit{\'o}rio de Meta-Dados},
booktitle = {CAPSI 2002, 3ª Confer{\^e}ncia da Associação Portuguesa de Sistemas de Informação},
year = {2002},
address = {Coimbra},
month = {November},
project = {gestinf},
url = {http://capsi2002.dei.uc.pt/},
document = {apsi2002-GestInf.pdf},
} @InProceedings{Silva.etal:UmModeloPara:2002, author = {M{\'a}rio J. Silva and Ana Grave},
title = {Um Modelo para Geração de Aplicações para Acesso a ERP em Ambiente M{\'o}vel},
booktitle = {CAPSI 2002, 3ª Confer{\^e}ncia da Associação Portuguesa de Sistemas de Informação},
year = {2002},
address = {Coimbra},
month = {November},
document = {apsi2002-erp-movel.pdf},
url = {http://capsi2002.dei.uc.pt/},
} @InProceedings{Batista.etal:MiningWebAccess:2002, author = {Paulo Batista and M{\'a}rio J. Silva},
title = {Mining Web Access Logs of an On-line Newspaper},
booktitle = {2nd International Conference on Adaptive Hypermedia and Adaptive Web Based Systems, Workshop on Recommendation and Personalization in E-commerce},
project = {ariadne},
year = {2002},
address = {M{\'a}laga, Spain},
month = {May},
document = {rpec02.pdf},
} @InProceedings{Gomes.etal:VersusAWeb:2002, author = {Daniel Gomes and João P. Campos and M{\'a}rio J. Silva},
title = {Versus: A Web Repository},
booktitle = {WDAS-2002: Workshop on Distributed Data Structures},
year = {2002},
month = {March},
project = {xmlbase},
document = {VersusWDAS02.pdf},
presentation = {posterWDASfinal.ppt},
} @InProceedings{Campos.etal:VersusAModel:2001, author = {João P. Campos and M{\'a}rio J. Silva},
title = {Versus: A Model for a Web Repository},
booktitle = {CRC'01 - 4ª Confer{\^e}ncia de Redes de Computadores},
year = {2001},
address = {Covilhã, Portugal},
month = {November},
project = {xmlbase},
document = {Versus.pdf},
presentation = {posterVersusCRC.ppt},
} @InProceedings{Costa.etal:RankingNoMotor:2001, author = {Miguel Costa and M{\'a}rio J. Silva},
title = {Ranking no Motor de Busca TUMBA},
booktitle = {CRC'01 - 4ª Confer{\^e}ncia de Redes de Computadores},
year = {2001},
address = {Covilhã, Portugal},
month = {November},
document = {rankingTumba.pdf},
project = {tumba},
} @InProceedings{Martins.etal:IsItPortuguese:2001, author = {Bruno Martins and M{\'a}rio J. Silva},
title = {Is it Portuguese? Language detection in large document collections},
booktitle = {CRC'01 - 4ª Confer{\^e}ncia de Redes de Computadores},
year = {2001},
address = {Covilhã, Portugal},
month = {November},
document = {IsPortuguese.pdf},
} @Article{Gomes.etal:Tarantula-Sistema:2001, author = {Daniel Gomes and M{\'a}rio J. Silva},
title = {Tar{\^a}ntula - Sistema de Recolha de Documentos da Web},
journal = {CRC'01 - 4ª Confer{\^e}ncia de Redes de Computadores},
year = {2001},
address = {Covilhã, Portugal},
month = {November},
document = {tarantulafinal2.pdf},
presentation = {posterTarantulaCRC.ppt},
} @InProceedings{Noronha.etal:ADepositFor:2001, author = {Norman Noronha and João P. Campos and Daniel Gomes and M{\'a}rio J. Silva},
title = {A Deposit for Digital Collections},
booktitle = {Research and Advanced Technology for Digital Libraries, 5th European Conference, ECDL 2001, Darmstadt, Germany},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
volume = {2163},
year = {2001},
isbn = {3-540-42537-3},
pages = {00-212},
month = {September},
doi = {10.1007/3-540-44796-2\_18},
url = {http://dx.doi.org/10.1007/3-540-44796-2\_18},
document = {paper\_ecdl01.pdf},
presentation = {ECDL1.ppt},
} @InProceedings{Gomes:Tarantula-Sistema:2001, author = {Daniel Gomes},
title = {Tar{\^a}ntula - Sistema de Recolha de Documentos na WWW},
booktitle = {Relat{\'o}rio do Est{\'a}gio Profissionalizante da FCUL},
year = {2001},
month={July},
document = {RelFinalTarantula43Alt.pdf},
presentation = {apresentacaoEstagio8.ppt},
bibdate = {2008-05-07},
} @InProceedings{Silva:WebAccessMining:2001, author = {M{\'a}rio J. Silva},
title = {Web Access Mining from an On-line Newspaper Logs},
booktitle = {12th International Meeting of the Euro Working Group on Decision Support Systems (EWG-DSS 2001)},
year = {2001},
month = {May},
document = {EWG2001.pdf},
} @MastersThesis{Ferreira:SuporteaPublicidade:2000, author = {Ant{\'o}nio Ferreira},
title = {Suporte {\`a} Publicidade na Internet: Projecto e Construção de um Gestor de Publicidade},
month = {Dezembro},
school = {University of Lisbon, Faculty of Sciences},
year = {2000},
url = {homepages.di.fc.ul.pt/\widetilde{}asfe/publications/msc-thesis.pdf},
} @TechReport{Batista.etal:ProspeccaoDosDados:2000, author = {Paulo Batista and M{\'a}rio J. Silva},
title = {Prospecção dos Dados de Acesso ao P{\'u}blico On-line},
institution = {University of Lisbon, Faculty of Sciences},
month = {October},
year = {2000},
number = {ARIADNE TR-00-14},
project = {ariadne},
} @InProceedings{Maria.etal:BuildingADigital:2000, author = {Nuno Maria and M{\'a}rio J. Silva},
title = {Building a Digital Library of Web News},
booktitle = {ECDL'2000 -- 4th European Conference on Research and Advanced Technology for Digital Libraries},
publisher = {Springer-Verlag, LNCS 1923},
paper = {shortpaper20.pdf},
month = {September},
year = {2000},
project = {sagres},
} @InProceedings{Campos.etal:ActiveXMLCompoundDocuments:2000, author = {João P. Campos and M{\'a}rio J. Silva},
title = {ActiveXML: Compound Documents for Integration of Heterogeneous Data Sources},
publisher = {Springer-Verlag, LNCS},
booktitle = {ECDL'2000 -- 4th European Conference on Research and Advanced Technology for Digital Libraries},
paper = {person.final.pdf},
year = {2000},
month = {September},
project = {ariadne},
} @MastersThesis{Maria.etal:Theme-basedRetrievalOf:2000, author = {Nuno Maria and M{\'a}rio J. Silva},
title = {Theme-based Retrieval of Web News},
school = {University of Lisbon, Faculty of Sciences},
project = {sagres},
month = {June},
year = {2000},
document = {tese\_final\_nuno\_maria.pdf},
} @InProceedings{Maria.etal:Theme-basedRetrievalOf:2000a, author = {Nuno Maria and M{\'a}rio J. Silva},
title = {Theme-based retrieval of Web News},
booktitle = {Proceedings of the 23rd annual international ACM SIGIR conference on Research and development in information retrieval},
publisher = {ACM Press},
month = {July},
year = {2000},
project = {sagres},
paper = {po25.pdf},
} @InProceedings{Maria.etal:Theme-basedRetrievalOf:2000b, author = {Nuno Maria and M{\'a}rio J. Silva},
title = {Theme-based Retrieval of Web News},
booktitle = {Proceedings of the Third International Workshop on the Web and Databases, WebDB 2000},
pages = {5--10},
year = {2000},
editor = {Dan Suciu, Gottfried Vossen},
address = {Dallas, Texas, USA},
month = {May},
note = {held at ACM PODS/SIGMOD 2000},
project = {sagres},
document = {p64webdb2000.pdf},
} @TechReport{Campos.etal:GILASoftware:1999, author = {João P. Campos and Ana Paula Afonso and M{\'a}rio J. Silva},
title = {GIL: a Software Tool for the Construction of Information Dissemination Systems},
institution = {University of Lisbon, Faculty of Sciences},
number = {DI/FCUL TR-99-4},
url = {http://www.di.fc.ul.pt/tech-reports/99-4.pdf},
year = {1999},
month = {December},
} @Article{Silva.etal:UmaArquitecturaDe:1999, author = {M{\'a}rio J. Silva and Ana Paula Afonso},
title = {Uma Arquitectura de Sistema para Information Appliances},
journal = {In Actas do Encontro Portugu{\^e}s de Computação M{\'o}vel - EPCM'99},
year = {1999},
month = {November},
} @Article{Silva.etal:CanaisDeInformacao:1999, author = {M{\'a}rio J. Silva and Ana Paula Afonso},
title = {Canais de Informação baseados em XML},
journal = {Actas do Encontro Portugu{\^e}s de Computação M{\'o}vel - EPCM'99},
year = {1999},
month = {November},
} @Article{Silva:DescobertaDeServicos:1999, author = {M{\'a}rio J. Silva},
title = {Descoberta de Serviços em Ambientes M{\'o}veis},
journal = {In Actas do EPCM'99 - Encontro Portugu{\^e}s de Computação M{\'o}vel},
year = {1999},
month = {November},
} @Article{Ferreira.etal:ArquitecturaEEnsaio:1999, author = {Ant{\'o}nio Ferreira and M{\'a}rio J. Silva},
title = {Arquitectura e Ensaio de Desempenho de um Gestor de Publicidade na Internet},
journal = {CRC'99 - 2ª Confer{\^e}ncia de Redes e Computadores},
address = {{\'E}vora},
project = {ariadne},
year = {1999},
month = {October},
url = {http://www.fccn.pt/crc1999/FINAIS/artigo18/ARTIGO18.HTM},
} @Article{Silva:ProspeccaoDosDados:1999, author = {M{\'a}rio J. Silva},
title = {Prospecção dos Dados de Acesso a um Servidor de Noticias Web},
journal = {CRC'99 - 2ª Confer{\^e}ncia de Redes e Computadores},
address = {{\'E}vora},
year = {1999},
month = {October},
url = {http://www.fccn.pt/crc1999/FINAIS/artigo28/ARTIGO28.HTM},
} @Article{Silva:DescobertaDeServicos:1999a, author = {M{\'a}rio J. Silva},
title = {Descoberta de Serviços em Ambientes M{\'o}veis},
journal = {CRC'99 - 2ª Confer{\^e}ncia de Redes e Computadores},
address = {{\'E}vora},
year = {1999},
month = {October},
url = {http://www.fccn.pt/crc1999/FINAIS/artigo25/ARTIGO25.HTM},
} @inProceedings{Maria.etal:SACAZ-Um:1999, author = {Nuno Maria and Ant{\'o}nio Ferreira and M{\'a}rio J. Silva},
title = {SACAZ - Um Sistema de Agentes para Carregamento de um Armaz{\'e}m de Dados de Acessos Web},
booktitle = {CRC'99 - 2ª Confer{\^e}ncia de Redes e Computadores},
address = {{\'E}vora},
year = {1999},
month = {October},
url = {http://www.fccn.pt/crc1999/FINAIS/artigo26/ARTIGO26.HTM},
} @Article{Afonso.etal:DynamicDataDelivery:1999, author = {Ana Paula Afonso and M{\'a}rio J. Silva},
title = {Dynamic Data Delivery to Mobile Users},
journal = {In Proceedings of the DEXA'99 2nd International Workshop, Mobility in Databases and Distributed Systems, MDDS'99},
year = {1999},
month = {September},
} @Article{Afonso.etal:TheDesignAnd:1999, author = {Ana Paula Afonso and M{\'a}rio J. Silva and João P. Campos},
title = {The Design and Implementation of the Ubidata Information Dissemination Framework},
journal = {In Proceedings of the International Symposium on Handheld and Ubiquitous Computing, HUC'99},
year = {1999},
month = {September},
} @Article{Silva.etal:DesigningInformationAppliances:1999, author = {M{\'a}rio J. Silva and Ana Paula Afonso},
title = {Designing Information Appliances using a Resource Replication Model},
journal = {Proceedings of International Symposium on Handheld and Ubiquitous Computing, HUC'99},
year = {1999},
document = {huc99.pdf},
month = {September},
} @TechReport{Campos:GILUmaFerramenta:1999, author = {João P. Campos},
title = {GIL: uma Ferramenta para a Construção de Sistemas de Disseminação de Informação},
note = {Relat{\'o}rio do Est{\'a}gio Profissionalizante da FCUL},
year = {1999},
month = {May},
} @Article{Maria.etal:NewsSearchAnArchitecture:1999, author = {Nuno Maria and M{\'a}rio J. Silva},
title = {NewsSearch: An Architecture for Information Retrieval of Online News},
institution = {FCUL},
number = {DI/FCUL TR-99-3},
year = {1999},
month = {May},
} @InBook{Silva:MobilidadeNaInternet:1999, author = {M{\'a}rio J. Silva},
title = {Mobilidade na Internet},
booktitle = {O Futuro da Internet},
editor = {Jos{\'e} Augusto Alves and Pedro Campos and Pedro Brito},
publisher = {Centro Atl{\^a}ntico},
year = {1999},
isbn = {972842608-9},
} @InProceedings{Maria.etal:ARIADNE-Digital:1998, author = {Nuno Maria and Pedro Gaspar and Nuno Grilo and Ant{\'o}nio Ferreira and M{\'a}rio J. Silva},
title = {ARIADNE - Digital Library Architecture},
year = {1998},
booktitle = {Second European Conference on Research and Advanced Technology for Digital Libraries},
address = {Crete, Greece},
month = {September},
project = {ariadne},
} @InProceedings{Afonso.etal:AnAdaptableFramework:1998, author = {Ana Paula Afonso and M{\'a}rio J. Silva and Francisco S. Regateiro},
title={UbiData: An Adaptable Framework for Information Dissemination to Mobile Users},
booktitle = {ECOOP'98 Workshop on Mobile Computing and Replication},
editor = {S. Demeyer and J. Bosch},
series = {LNCS},
volume = {1543},
year = {1998},
publisher = {Springer-Verlag},
month = {July},
} @InProceedings{Maria.etal:InformationPreservationIn:1998, author = {Nuno Maria and Ant{\'o}nio Ferreira and M{\'a}rio J. Silva and Pedro Gaspar},
title = {Information Preservation in ARIADNE},
booktitle = {Proceedings of the 6th ERCIM DELOS Workshop - Preservation of Digital Information},
address = {Tomar, Portugal},
project = {ariadne},
year = {1998},
month = {June},
} @InProceedings{Silva.etal:DesenvolvimentoDeBases:1998, author = {M{\'a}rio J. Silva and Ana Paula Afonso and Paulo Batista},
title = {Desenvolvimento de Bases de Dados Geo-referenciados em C{\^a}maras Municipais},
booktitle = {Actas do Semin{\'a}rio de Desenvolvimento de Sistemas de Informação em C{\^a}maras Municipais},
address = {Comissão de Coordenação Regional de Lisboa e Vale do Tejo},
year = {1998},
month = {May},
} @InProceedings{Silva.etal:ACEUmAgente:1998, author = {M{\'a}rio J. Silva and Beatriz Neto and Duarte Gouveia},
title = {ACE: Um Agente de Compras Especializado},
booktitle = {XII Simp{\'o}sio Brasileiro de Engenharia de Software, SBES'98},
year = {1998},
address = {Maringa, Parana, Brazil},
month = {October},
url = {http://www.di.fc.ul.pt/tech-reports/98-6.pdf},
} @TechReport{Afonso.etal:DynamicChannelsA:1998, author = {Ana Paula Afonso and M{\'a}rio J. Silva and Francisco S. Regateiro},
title = {Dynamic Channels: A New Methodology for Mobile Computing Applications},
institution = {University of Lisbon, Faculty of Sciences},
year = {1998},
number = {DI/FCUL TR-98-4},
url = {http://www.di.fc.ul.pt/tech-reports/98-4.pdf},
month = {April},
}
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