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Hugo Bastos, Lisete Sousa, Luka A. Clarke, Francisco M. Couto 2015: GRYFUN: a web application for GO term annotation visualization and analysis in protein sets. PLoS ONE 10(3), e0119631.

BibTeX source
Catia Pesquita, João D Ferreira, Francisco M Couto, Mário J Silva 2014: The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources. Journal of biomedical semantics.

DOI | | Document | BibTeX source
Hugo Bastos, Luka A. Clarke, Francisco M. Couto 2013: Annotation extension through protein family annotation coherence metrics. Frontiers in Genetics.

Poster | BibTeX source
Catia Pesquita, João D. Ferreira, Francisco M. Couto, Mário J. Silva, Semi-Automated Annotation of Epidemiological Resources. Turin, Italy. Poster @ Epiwork International Workshop "Digital Epidemiology". 2013

| BibTeX source
Daniel Faria, Andreas Schlicker, Catia Pesquita, Hugo Bastos, Antonio E N Ferreira, Mario Albrecht, Andre Falcao 2012: Mining GO Annotations for Improving Annotation Consistency. PLoS ONE 7(7), e40519.

| Poster | BibTeX source
João D. Ferreira, Francisco M. Couto, Mário J. Silva, Ontologies in the Epidemiological Domain. Poster presented at EE2, Epiwork/Epifor 2nd International Workshop: Facing the Challenge of Infectious Diseases. 2012

Document | BibTeX source
Hugo Bastos, Bruno Tavares, Catia Pesquita, Daniel Faria, Francisco Couto: Application of Gene Ontology to Gene Identification. In Silico Tools for Gene Discovery: Methods in Molecular Biology. Springer, 2011.

Document | BibTeX source
Luis Filipe Lopes, A Metadata Model for the Annotation of Epidemiological Data Master Thesis, University of Lisbon, Faculty of Sciences, September 2010.

Document | BibTeX source
Catia Pesquita, Daniel Faria, Rui Lopes, Francisco Couto, Measuring coherence between electronic and manual annotations in biological databases.SAC '09: Proceedings of the 2009 ACM Symposium on Applied Computing 2009. ACM.

| Document | BibTeX source
Francisco Couto, Mário Silva, Vivian Lee, Emily Dimmer, Evelyn Camon, Rolf Apweiler, Harald Kirsch, Dietrich Rebholz-Schuhmann: Verification of Uncurated Protein Annotations. in: Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration. Idea Group Inc. 2008.

| Document | BibTeX source
Catia Pesquita, Daniel Faria, Tiago Grego, Francisco Couto, Mário J. Silva: Untangling BioOntologies for Mining Biomedical Information. in: Handbook of Research on Text and Web Mining Technologies. Idea Group Inc. 2008.

DOI | | BibTeX source
Francisco Couto, Mário J. Silva, V. Lee, E. Dimmer, E. Camon, R. Apweiler, H. Kirsch, D. Rebholz-Schuhmann 2006: GOAnnotator: linking electronic protein GO annotation to evidence text. Journal of Biomedical Discovery and Collaboration 1(19), -.

| Document | BibTeX source
Francisco Couto, Mário J. Silva: Advanced Data Mining Technologies in Bioinformatics. XV Mining the BioLiterature: towards automatic annotation of genes and proteins. in: Idea Group Inc. 2006. ISBN: 1-59140-863-6.

| Document | BibTeX source
Francisco Couto, Mário J. Silva, V. Lee, E. Dimmer, E. Camon, R. Apweiler, H. Kirsch, D. Rebholz-Schuhmann, GOAnnotator: linking electronic protein GO annotation to evidence text Technical Report. DI/FCUL TR 5-25. FCUL, December 2005.

| Document | BibTeX source
Francisco Couto, Mário J. Silva, Pedro M. Coutinho, Validation of Automated Protein Annotation Technical Report. TR 5-24. FCUL, November 2005.

| Document | Presentation | BibTeX source
Pooja Jain, Francisco Couto, Mário J. Silva, Jorg D. Becker, Literature Based Functional Annotation of Genes.BKDB2005 - Bioinformatics: Knowledge Discovery in Biology June, 2005.

| Document | Presentation | BibTeX source
Francisco Couto, Mário J. Silva 2003: ProFAL: PROtein Functional Annotation through Literature. JISBD 2003 - VIII Jornadas de Ingeniería del Software y Bases de Datos.

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