Publications of Francisco M Couto

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Marcia Barros, Andre Lamurias, Goncalo Figueiro, Marta Antunes, Joana Teixeira, Alexandre Pinheiro, Francisco M Couto, ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt.9th International Workshop on Semantic Evaluation (SemEval) 2016.

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Diogo Goncalves, Miguel Costa, Francisco M. Couto, A Flexible Recommendation System for Cable.3rd Workshop on Recommendation Systems for Television and online Video (RecSysTV) 2016.

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Diogo Goncalves, Miguel Costa, Francisco M. Couto, A Large-Scale Characterization of User Behaviour in Cable TV.3rd Workshop on Recommendation Systems for Television and online Video (RecSysTV) 2016.

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Hugo Bastos, Lisete Sousa, Luka A. Clarke, Francisco M. Couto 2015: GRYFUN: a web application for GO term annotation visualization and analysis in protein sets. PLoS ONE 10(3), e0119631.

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Miguel Costa, Mário J. Silva, Francisco M Couto, Learning Temporal-Dependent Ranking Models.Proceedings of the 37th international ACM SIGIR conference on Research and Development in Information Retrieval p. 757--766, 2014. ACM.

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Daniel Faria, Catia Pesquita, Emanuel Santos, Matteo Palmonari, Isabel F Cruz, Francisco M Couto, The agreementmakerlight ontology matching system.On the Move to Meaningful Internet Systems: OTM 2013 Conferences p. 527--541, 2013. Springer.

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Catia Pesquita, Daniel Faria, Emanuel Santos, Francisco M Couto, To repair or not to repair: reconciling correctness and coherence in ontology reference alignments.Ontology Matching Workshop at ISWC 2013 p. 13, 2013.

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Catia Pesquita, João D Ferreira, Francisco M Couto, Mário J Silva 2014: The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources. Journal of biomedical semantics.

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José Carilho, Oliver Schnell, João Martins, Luis Carriço, Carlos Duarte, Francisco Couto, Tiago Guerreiro, Predicting Relevant Events in the Life of a Person with Alzheimer.Bioinformatics Open Days, Universidade do Minho Braga, Portugal, February, 2014.

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Lara Silva, Francisco Couto, Helena Manso, Astrid Vicente, Development of a semantic model for Cerebrovascular Accident (CVA) Patients.Bioinformatics Open Days, Universidade do Minho Braga, Portugal, February, 2014.

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Natacha P. Leitão, João Leitão, Francisco Couto, LLC-GNUMAP: Scalable, Precise, and High-Coverage Genomics Mapping.Bioinformatics Open Days, Universidade do Minho Braga, Portugal, February, 2014.

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Andre Lamurias, Francisco Couto, Identifying Interactions Between Chemical Entities in Text.Bioinformatics Open Days, Universidade do Minho Braga, Portugal, February, 2014.

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D. Batista, J. Ferreira, Francisco Couto, M. Silva, Toponym Disambiguation using Ontology-based Semantic Similarity.Computational Processing of the Portuguese Language (PROPOR) 2012.

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D. Faria, C. Pesquita, E. Santos, M. Palmonari, I. Cruz, Francisco Couto, The AgreementMakerLight Ontology Matching System.The 12th International Conference on Ontologies, DataBases, and Applications of Semantics (ODBASE) 2013.

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S. Moreira, D. Batista, P. Carvalho, Francisco Couto, M. Silva 2013: Tracking Politics with POWER. Program: electronic library and information systems.

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C. Machado, A. Freitas, Francisco Couto 2013: Enrichment analysis applied to disease prognosis. Journal of Biomedical Semantics.

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Francisco Couto, H. Pinto 2013: The Next Generation of Similarity Measures that fully explore the Semantics in Biomedical Ontologies. Journal of Bioinformatics and Computational Biology.

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C. Machado, D. Rebholz-Schuhmann, A. Freitas, Francisco Couto 2013: The semantic web in translational medicine: current applications and future directions. Briefings in Bioinformatics, Oxford Univ Press.

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Catia Pesquita, Daniel Faria, Cosmin Stroe, Emanuel Santos, Isabel F Cruz, Francisco M Couto, What's in a 'nym'? Synonyms in Biomedical Ontology Matching.International Semantic Web Conference p. 526-541, 2013. Springer Berlin Heidelberg.

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Andre Lamurias, Tiago Grego, Francisco Couto, Chemical compound and drug name recognition using CRFs and semantic similarity based on ChEBI.Proceedings of the fourth BioCreative challenge evaluation workshop 2013.

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Hugo Bastos, Luka A. Clarke, Francisco M. Couto 2013: Annotation extension through protein family annotation coherence metrics. Frontiers in Genetics.

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João D Ferreira, Janna Hastings, Francisco M Couto 2013: Exploiting disjointness axioms to improve semantic similarity measures. Oxford Bioinformatics (), btt491.

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João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Digital preservation of epidemic resources: coupling metadata and ontologies.Proceedings of the 10th International Conference on Preservation of Digital Objects 2013.

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João Zamite, João D. Ferreira, Paulo Graça, Carlos Santos, Tiago Posse, Cátia Pesquita, Dulce Domingos, Francisco Couto, Mário J. Silva, D3.6 - Report: Final Specification of the Epidemic Marketplace Platform and Evaluation Results Technical Report. Technical Report . FCUL, July 2013.

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Catia Pesquita, João D. Ferreira, Francisco M. Couto, Mário J. Silva, Semi-Automated Annotation of Epidemiological Resources. Turin, Italy. Poster @ Epiwork International Workshop "Digital Epidemiology". 2013

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Tiago Grego, Francisco Pinto, Francisco Couto, LASIGE: using Conditional Random Fields and ChEBI ontology.Proceedings of the International Workshop on Semantic Evaluation (SemEval2013) 2013.

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Miguel Costa, Daniel Gomes, Francisco M Couto, Mário J. Silva, A Survey of Web Archive Search Architectures.Proceedings of the 3rd Temporal Web Analytics Workshop Rio de Janeiro, Brazil, 2013.

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Tiago Grego, Francisco Couto 2013: Enhancement of Chemical Entity Identification in Text Using Semantic Similarity Validation. PLOS ONE 5(8), e62984.

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João Ferreira, Daniela Paolotti, Francisco Couto, Mário J. Silva 2012: On the usefulness of ontologies in epidemiologic research and practice. Journal of Epidemiology and Community Health.

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Catia M. Machado, Ana T. Freitas, Francisco Couto, Enrichment analysis applied to disease prognosis. Em: M. Boeker, H. Herre, R. Hoehndorf, F. Loebe (Ed.), 4th Workshop on Ontologies in Biomedicine and Life Sciences (OBML) September, 2012.


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