Publications of Francisco M Couto

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Francisco Couto, Mário J. Silva, Pedro M. Coutinho 2007: Measuring Semantic Similarity between Gene Ontology Terms. Data and Knowledge Engineering, Elsevier.

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Daniel Faria, Catia Pesquita, Francisco Couto, Andre O. Falcao, ProteInOn: A Web Tool for Protein Semantic Similarity Technical Report. TR 07-6. DI FCUL, March 2007.

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Francisco Couto, Mário J. Silva, V. Lee, E. Dimmer, E. Camon, R. Apweiler, H. Kirsch, D. Rebholz-Schuhmann 2006: GOAnnotator: linking electronic protein GO annotation to evidence text. Journal of Biomedical Discovery and Collaboration 1(19), -.

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Francisco Couto, Mário J. Silva, Pedro M. Coutinho, Validating Associations in Biological Databases.Proceedings of the 2006 ACM CIKM International Conference on Information and Knowledge Management, Arlington, Virginia, USA, November 6-11, 2006 November, 2006.

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Francisco Couto, Mário J. Silva: Advanced Data Mining Technologies in Bioinformatics. XV Mining the BioLiterature: towards automatic annotation of genes and proteins. in: Idea Group Inc. 2006. ISBN: 1-59140-863-6.

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Francisco Couto, ReBIL: Relating Biological Information through Literature PhD Thesis. DI/FCUL, January 2006.

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Francisco Couto, Mário J. Silva, V. Lee, E. Dimmer, E. Camon, R. Apweiler, H. Kirsch, D. Rebholz-Schuhmann, GOAnnotator: linking electronic protein GO annotation to evidence text Technical Report. DI/FCUL TR 5-25. FCUL, December 2005.

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Francisco Couto, Mário J. Silva, Pedro M. Coutinho, Validation of Automated Protein Annotation Technical Report. TR 5-24. FCUL, November 2005.

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Francisco Couto, Mário J. Silva, Pedro Coutinho, Semantic Similarity over the Gene Ontology: Family Correlation and Selecting Disjunctive Ancestors.ACM CIKM - Conference in Information and Knowledge Management October, 2005.

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Pooja Jain, Francisco Couto, Mário J. Silva, Jorg D. Becker, Literature Based Functional Annotation of Genes.BKDB2005 - Bioinformatics: Knowledge Discovery in Biology June, 2005.

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Francisco Couto, Mário J. Silva, Pedro Fernandes: Proceedings of the Bioinformatics: Knowledge Discovery in Biology Workshop (BKDB 2005). Workshop Proccedings, 2005.

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Francisco Couto, Mário J. Silva, Pedro Coutinho 2005: Finding Genomic Ontology Terms in Text using Evidence Content. BMC Bioinformatics Journal S1(6), S21.

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D. Rebholz-Schuhmann, H. Kirsch, Francisco Couto 2005: Facts from text: Is Text Mining ready to deliver? PLoS Biology Journal 2(3), e65.

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Francisco Couto, Mário J. Silva, FiGO: Finding GO terms in unstructured text.Critical Assessment of Information Extraction systems in Biology (BioCreative) Granada, Spain, March, 2004.

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Francisco Couto, Bruno Martins, Mário J. Silva, Classifying Biological Articles using Web Resources.19th ACM Symposium on Applied Computing (SAC), Bioinformatics Track, Nicosia, Cyprus March, 2004.

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Francisco Couto, Pooja Jain, Mário J. Silva, ReBIL: Relating Biological Information through Literature.1st Annual Meeting of Portuguese Proteomic Network - ProCura: Functional Genomics And Proteomics Inst. Nacional de Saúde Dr Ricardo Jorge, Lisboa, November, 2003.

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Francisco Couto, Mário J. Silva, Implementation of a Functional Semantic Similarity Measure between Gene-Products Technical Report. DI/FCUL TR 3-29. FCUL, November 2003.

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Francisco Couto, Mário J. Silva 2003: ProFAL: PROtein Functional Annotation through Literature. JISBD 2003 - VIII Jornadas de Ingeniería del Software y Bases de Datos.

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Francisco Couto, Mário J. Silva, Bioinformática - Exploração da Informação. Em: centroatlantico.pt Magazine (Ed.), October, 2003.

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Francisco Couto, Mário J. Silva, Improving Information Extraction through Biological Correlation.Data Mining and Text Mining for Bioinformatics Workshop at the ECML/PKDD2003 Dubrovnik-Cavtat, Croatia, September, 2003.

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Francisco Couto, Bruno Martins, Mário J. Silva, Classifying Biomedical Articles using Web Resources: application to KDD Cup 02 Technical Report. DI/FCUL TR 3-24. FCUL, July 2003.

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Francisco Couto, Mário J. Silva, Curating Extracted Information through the Correlation between Structure and Function.Third meeting of the special interest group on Text Mining at the Intelligent Systems for Molecular Biology (ISMB) Brisbane, Australia, June, 2003.

| Document | Poster | BibTeX source
Francisco Couto, Mário J. Silva, Pedro M Coutinho, ReBIL: Relating Biological Information through Literature.Poster at Intelligent Systems for Molecular Biology (ISMB) Brisbane, Australia, June, 2003.


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