Publications of 2009

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Ana L. Teixeira, ThermInfo: Sistema de Informação para Coligir e Apresentar Propriedades Termoquímicas Master Thesis, Faculty of Sciences of the University of Lisbon, July 2009.

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Andre O Falcao, CELPASIM 2.0 - Manual do Utilizador. Departamento de Informática da Faculdade de Ciências da Universidade de Lisboa. 2009

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Daniel Faria, Catia Pesquita, Francisco Couto, Andre O Falcao, GOclasses: molecular function as viewed by proteins.BioOntologies SIG at ISMB/ECCB - 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2009.

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Henrique F. Gagliardi, Fabrício A.B. Silva, Denise Stringhini, Fabio S. Lopes, Ricardo M. Pereira, The Integra-Model Service: enabling the simulation of multiple epidemiological models and scenarios on the grid.Proceedings of the the Second EELA-2 Conference 2009.

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Fabrício A.B. Silva, Henrique F. Gagliardi, Eduardo Gallo, Maria A. Madope, Virgílio Cavicchioli Neto, Ivan T. Pisa, Domingos Alves: IntegraEPI: Epidemiologic Surveillance on the Grid. Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare. Information Science Reference, 2009.

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Fabrício A.B. Silva, Hermes Senger 2009: Improving Scalability of Bag-of-Tasks Applications Running on Master-Slave Platforms. Parallel Computing 35(2), 57-71.

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P.M. Coutinho, C. Rancurel, M. Stam, T. Bernard, Francisco Couto, E.G.J. Danchin, B. Henrissat: Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases. in: Bioinformatics for Glycobiology and Glycomics. Wiley. 2009.

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Catia Pesquita, Francisco Couto, Taking GO where we need it to go: focused automated enrichment of the Gene Ontology.Student Council Symposium at ISMB/ECCB 2009. Stockholm, Sweden 2009.

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Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, Collaborative Evaluation of GO-based Similarity Measures.The 12th Annual Bio-Ontologies Meeting at ISMB/ECCB 2009 2009.

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Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, CESSM : Collaborative Evaluation of Semantic Similarity Measures.JB2009: Challenges in Bioinformatics November, 2009.

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Hugo Bastos, Tiago Grego, Francisco Couto, Pedro M. Coutinho, Enzyme family coherence assessment: validation and prediction.JB'2009 - Challenges in Bioinformatics p. 26-30, Lisbon, Portugal, November, 2009.

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Bruno Paiva, Ana Paula Cláudio, Maria Beatriz Carmo, Paulo Pombinho, Cristina Catita, Estratégias para a Representação de Pontos de Interesse sobre Mapas.Actas do 17º Encontro Português de Computação Gráfica p. 305-306, October, 2009.

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Hugo Aguiar, Maria Beatriz Carmo, Paulo Pombinho, Ana Paula Afonso, Pesquisas Baseadas na Localização e na Orientação em Dispositivos Móveis.Actas do 17º Encontro Português de Computação Gráfica p. 269-275, October, 2009.

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Paulo Pombinho, Ana Paula Afonso, Maria Beatriz Carmo, Contextos e Visualização Adaptativa em Ambientes Móveis.1º INForum - Simpósio de Informática September, 2009.

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Paulo Pombinho, Maria Beatriz Carmo, Ana Paula Afonso, Evaluation of Overcluttering Prevention Techniques for Mobile Devices.Information Visualization (IV2009) p. 127-134, July, 2009.

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Mário J. Silva, Paula Carvalho, Luís Sarmento, Eugénio Oliveira, Pedro Magalhães, The Design of OPTIMISM, an Opinion Mining System for Portuguese Politics.New Trends in Artificial Intelligence: Proceedings of EPIA 2009 - Fourteenth Portuguese Conference on Artificial Intelligence p. 565-576, October, 2009. Universidade de Aveiro.

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Hugo Gonçalo Oliveira, Nuno Cardoso, SAHARA: an online service for HAREM Named Entity Recognition Evaluation. Em: Thiago A. S. Pardo, Maria das Graças Volpe Nunes (Eds.), Proceedings of the 7th Brazilian Symposium in Information and Human Language Technology, STIL 2009 São Carlos, SP, Brazil, 8-11th September, 2009.

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Nuno Cardoso, GIKICLEF topics and Wikipedia articles: Did it blend?.Poster presented at the Cross Language Evaluation Forum (CLEF 2009) Corfu, Greece, 30 September - 2 October, 2009.

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Nuno Cardoso, David Batista, Francisco J. Lopez-Pellicer, Mário J. Silva, Where in the Wikipedia is that answer? The XLDB at the GikiCLEF 2009 task. Em: Carol Peters et al. (Eds.), Cross Language Evaluation Forum: Working Notes for CLEF 2009 Corfu, Greece, 30 September - 2 October, 2009.

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Nuno Cardoso, Patrícia Sousa, Mário J. Silva 2009: Experiments with Geographic Evidence Extracted from Documents. in: Peters, Carol, Deselaers, Thomas, Ferro, Nicola, Gonzalo, Julio, Jones, Gareth J.F., Kurimo, Mikko, Mandl, Thomas, Peñas, Anselmo, Petras, Vivien (Eds.) : Evaluating Systems for Multilingual and Multimodal Information Access: 9th Workshop of the Cross-Language Evaluation Forum, CLEF 2008, Aarhus, Denmark, September 17-19, 2008, Revised Selected Papers. Springer., 885-893.

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Diana Santos, Nuno Cardoso, Paula Carvalho, Iustin Dornescu, Sven Hartrumpf, Johannes Leveling, Yvonne Skalban 2009: GikiP at GeoCLEF 2008: Joining GIR and QA Forces for Querying Wikipedia. in: Peters, Carol, Deselaers, Thomas, Ferro, Nicola, Gonzalo, Julio, Jones, Gareth J.F., Kurimo, Mikko, Mandl, Thomas, Peñas, Anselmo, Petras, Vivien (Eds.) : Evaluating Systems for Multilingual and Multimodal Information Access: 9th Workshop of the Cross-Language Evaluation Forum, CLEF 2008, Aarhus, Denmark, September 17-19, 2008, Revised Selected Papers. Springer., 894--905.

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Francisco J. Lopez-Pellicer, Marcirio Chaves, Catarina Rodrigues, Mário J. Silva, Geographic Ontologies Production in Grease-II Technical Report. TR 09-18. University of Lisbon, Faculty of Sciences, LASIGE, November 2009. doi: 10455/3256

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David Batista, Prospecção de Conceitos Geográficos na Web Master Thesis, University of Lisbon, Faculty of Sciences, September 2009.

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Marcirio Silveira Chaves, Uma Metodologia para Construção de Geo-Ontologias PhD Thesis. Faculty of Sciences, University of Lisbon, September 2009.

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Ivo Anastácio, Bruno Martins, Pavel Calado, A Comparison of Different Approaches for Assigning Geographic Scopes to Documents.INFORUM September, 2009.

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Ivo Anastácio, Bruno Martins, Pavel Calado, Classifying Documents According to Locational Relevance.Proceedings of EPIA 2009 - Fourteenth Portuguese Conference on Artificial Intelligence October, 2009.

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Catia Machado, GREAT: Gene Regulation Evaluation Tool Master Thesis, University of Lisbon, Faculty of Sciences, July 2009.

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Daniel Faria, António EN Ferreira, Andre O Falcao 2009: Enzyme classification with peptide programs: a comparative study. BMC Bioinformatics (10), 231.

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Paula Carvalho, Luís Sarmento, Mário J. Silva, Eugénio de Oliveira, Clues for Detecting Irony in User-Generated Contents: Oh...!! It's “so easy“ ;-).Proceedings of TSA'09 - Text Sentiment Analysis, held at ACM CIKM 2009 Hong Kong, China, November, 2009. ACM Press.

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Luís Sarmento, Paula Carvalho, Mário J. Silva, Eugénio de Oliveira, Automatic Creation of a Reference Corpus for Political Opinion Mining in User-Generated Content.Proceedings of TSA'09 - 1st International CIKM Workshop on Topic-Sentiment Analysis for Mass Opinion Measurement, held at ACM CIKM 2009 Hong Kong, China, November, 2009. ACM Press.


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