Catia Pesquita

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cpesquita@di.fc.ul.pt
www.di.fc.ul.pt/~catiapesquita

Contents

Research Interests

BioInformatics, Semantic Web, Ontologies, Data and Text Mining, Knowledge Management

Projects

Current: SOMER, SmartData, BOA, AEB
Past: EPIWork, VPH-NoE

Students

Master: Catarina Martins, Daniela Oliveira, João Cardoso

Publications

< 1 2 > Results 1 - 3039 bib's were found (1.6 secs)

BibTeX source
Daniel Faria, Catia Pesquita, Emanuel Santos, Matteo Palmonari, Isabel F Cruz, Francisco M Couto, The agreementmakerlight ontology matching system.On the Move to Meaningful Internet Systems: OTM 2013 Conferences p. 527--541, 2013. Springer.

BibTeX source
Catia Pesquita, Daniel Faria, Emanuel Santos, Francisco M Couto, To repair or not to repair: reconciling correctness and coherence in ontology reference alignments.Ontology Matching Workshop at ISWC 2013 p. 13, 2013.

BibTeX source
Catia Pesquita, João D Ferreira, Francisco M Couto, Mário J Silva 2014: The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources. Journal of biomedical semantics.

BibTeX source
Catia Pesquita, Daniel Faria, Cosmin Stroe, Emanuel Santos, Isabel F Cruz, Francisco M Couto, What's in a 'nym'? Synonyms in Biomedical Ontology Matching.International Semantic Web Conference p. 526-541, 2013. Springer Berlin Heidelberg.

Document | BibTeX source
João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Digital preservation of epidemic resources: coupling metadata and ontologies.Proceedings of the 10th International Conference on Preservation of Digital Objects 2013.

Document | BibTeX source
João Zamite, João D. Ferreira, Paulo Graça, Carlos Santos, Tiago Posse, Cátia Pesquita, Dulce Domingos, Francisco Couto, Mário J. Silva, D3.6 - Report: Final Specification of the Epidemic Marketplace Platform and Evaluation Results Technical Report. Technical Report . FCUL, July 2013.

Poster | BibTeX source
Catia Pesquita, João D. Ferreira, Francisco M. Couto, Mário J. Silva, Semi-Automated Annotation of Epidemiological Resources. Turin, Italy. Poster @ Epiwork International Workshop "Digital Epidemiology". 2013

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Catia Pesquita, Francisco M. Couto 2012: Predicting the Extension of Biomedical Ontologies. PLOS Computational Biology 9(8), e1002630.

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Daniel Faria, Andreas Schlicker, Catia Pesquita, Hugo Bastos, Antonio E N Ferreira, Mario Albrecht, Andre Falcao 2012: Mining GO Annotations for Improving Annotation Consistency. PLoS ONE 7(7), e40519.

Document | Presentation | BibTeX source
João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Bringing epidemiology into the Semantic Web.International Conference on Biomedical Ontologies (ICBO) 2012.

Document | BibTeX source
Tiago Grego, Catia Pesquita, Hugo Bastos, Francisco M. Couto 2012: Chemical Entity Recognition and Resolution to ChEBI. ISRN Bioinformatics (2012), 9.

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João D. Ferreira, Catia Pesquita, Francisco Couto, Mário J. Silva, Epiwork Deliverable 3.5: Epidemic Data Ontology Technical Report. Technical Report . University of Lisbon, Faculty of Sciences, LASIGE, January 2012.

BibTeX source
Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari, Using AgreementMaker to Align Ontologies for OAEI 2011.Ontology Matching Workshop at the 10th International Semantic Web Conference 2011.

Document | BibTeX source
Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross, Biomedical Ontology Matching Using the AgreementMaker System.International Conference on Biomedical Ontologies 2011.

Document | BibTeX source
Catia Pesquita, Francisco Couto, Where GO is going and what it means for ontology extension.International Conference on Biomedical Ontologies 2011.

Document | BibTeX source
Bruno Tavares, Hugo Bastos, Daniel Faria, Joao D. Ferreira, Tiago Grego, Catia Pesquita, Francisco Couto, The Biomedical Ontology Applications (BOA) framework.Proceedings of ICBO 2011.

Document | BibTeX source
Hugo Bastos, Bruno Tavares, Catia Pesquita, Daniel Faria, Francisco Couto: Application of Gene Ontology to Gene Identification. In Silico Tools for Gene Discovery: Methods in Molecular Biology. Springer, 2011.

BibTeX source
Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco Couto, BLOOMS on AgreementMaker: results for OAEI 2010.ISWC Workshop on Ontology Matching 2010.

BibTeX source
Patricia Gomes-Alves, Francisco Couto, Catia Pesquita, AV Coelho, Deborah Penque 2010: Rescue of F508del-CFTR by RXR motif inactivation triggers proteome modulation associated with the unfolded protein response. Biochimica et Biophysica Acta (BBA)-Proteins % Proteomics 4(1804), 856-865.

Document | BibTeX source
Daniel Faria, Catia Pesquita, Francisco Couto, Andre O Falcao, GOclasses: molecular function as viewed by proteins.BioOntologies SIG at ISMB/ECCB - 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2009.

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Tiago Grego, João D. Ferreira, Catia Pesquita, Hugo Bastos, Diogo Vila Viçosa, João Freire, Francisco Couto, Chemical and Metabolic Pathway Semantic Similarity Technical Report. TR 2010-01. University of Lisbon, Faculty of Sciences, LASIGE, March 2010.

BibTeX source
Catia Pesquita, Francisco Couto, Taking GO where we need it to go: focused automated enrichment of the Gene Ontology.Student Council Symposium at ISMB/ECCB 2009. Stockholm, Sweden 2009.

Poster | BibTeX source
Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, Collaborative Evaluation of GO-based Similarity Measures.The 12th Annual Bio-Ontologies Meeting at ISMB/ECCB 2009 2009.

Document | BibTeX source
Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, CESSM : Collaborative Evaluation of Semantic Similarity Measures.JB2009: Challenges in Bioinformatics November, 2009.

DOI | | BibTeX source
Catia Pesquita, Daniel Faria, Andre O Falcao, Philip Lord, Francisco Couto 2009: Semantic Similarity in Biomedical Ontologies. PLoS Computational Biology.

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Francisco Couto, Catia Pesquita, Tiago Grego, Paulo Verissimo 2009: Handling self-citations using Google Scholar. Cybermetrics: International Journal of Scientometrics, Informetrics and Bibliometrics.

Document | BibTeX source
Catia Pesquita, Tiago Grego, Francisco Couto 2009: Identifying Gene Ontology Areas for Automated Enrichment. Lecture Notes in Computer Science (5518), 934-941.

BibTeX source
I.W. Taylor, R. Linding, D. Warde-Farley, Y. Liu, Catia Pesquita, Daniel Faria, S. Bull, T. Pawson, Q. Morris, J.L. Wrana 2009: Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nature Biotechnology 27(), 199-204.

Document | BibTeX source
Catia Pesquita, Daniel Faria, Rui Lopes, Francisco Couto, Measuring coherence between electronic and manual annotations in biological databases.SAC '09: Proceedings of the 2009 ACM Symposium on Applied Computing 2009. ACM.

Poster | BibTeX source
Catia Pesquita, Francisco Couto, Mario Silva, Automated Enrichment of BioOntologies.First Portuguese Forum on Computational Biology (as a poster) IGC, 2008.


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