Catia Pesquita
From XLDB
Name: Catia Pesquita
E-mail: cpesquita@xldb.di.fc.ul.pt
Webpage: http://xldb.di.fc.ul.pt/~cpesquita
Projects: BOA, AEB, VPH-NoE
Research interests: BioInformatics, Computational Biology, Data and Text Mining, Biomedical Ontologies, Semantic Web, Knowledge Management
Publications
URL | BibTeX source
Catia Pesquita, Francisco M. Couto 2012: Predicting the Extension of Biomedical Ontologies. PLOS Computational Biology 9(8), e1002630.
Catia Pesquita, Francisco M. Couto 2012: Predicting the Extension of Biomedical Ontologies. PLOS Computational Biology 9(8), e1002630.
URL | BibTeX source
Daniel Faria, Andreas Schlicker, Catia Pesquita, Hugo Bastos, Antonio E N Ferreira, Mario Albrecht, Andre Falcao 2012: Mining GO Annotations for Improving Annotation Consistency. PLoS ONE 7(7), e40519.
Daniel Faria, Andreas Schlicker, Catia Pesquita, Hugo Bastos, Antonio E N Ferreira, Mario Albrecht, Andre Falcao 2012: Mining GO Annotations for Improving Annotation Consistency. PLoS ONE 7(7), e40519.
Document | Presentation | BibTeX source
João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Bringing epidemiology into the Semantic Web.International Conference on Biomedical Ontologies (ICBO) 2012.
João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Bringing epidemiology into the Semantic Web.International Conference on Biomedical Ontologies (ICBO) 2012.
Document | BibTeX source
Tiago Grego, Catia Pesquita, Hugo Bastos, Francisco M. Couto 2012: Chemical Entity Recognition and Resolution to ChEBI. ISRN Bioinformatics (2012), 9.
Tiago Grego, Catia Pesquita, Hugo Bastos, Francisco M. Couto 2012: Chemical Entity Recognition and Resolution to ChEBI. ISRN Bioinformatics (2012), 9.
Document | BibTeX source
João D. Ferreira, Catia Pesquita, Francisco Couto, Mário J. Silva, Epiwork Deliverable 3.5: Epidemic Data Ontology Technical Report. Technical Report . University of Lisbon, Faculty of Sciences, LASIGE, January 2012.
João D. Ferreira, Catia Pesquita, Francisco Couto, Mário J. Silva, Epiwork Deliverable 3.5: Epidemic Data Ontology Technical Report. Technical Report . University of Lisbon, Faculty of Sciences, LASIGE, January 2012.
BibTeX source
Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari, Using AgreementMaker to Align Ontologies for OAEI 2011.Ontology Matching Workshop at the 10th International Semantic Web Conference 2011.
Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari, Using AgreementMaker to Align Ontologies for OAEI 2011.Ontology Matching Workshop at the 10th International Semantic Web Conference 2011.
Document | BibTeX source
Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross, Biomedical Ontology Matching Using the AgreementMaker System.International Conference on Biomedical Ontologies 2011.
Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross, Biomedical Ontology Matching Using the AgreementMaker System.International Conference on Biomedical Ontologies 2011.
Document | BibTeX source
Catia Pesquita, Francisco Couto, Where GO is going and what it means for ontology extension.International Conference on Biomedical Ontologies 2011.
Catia Pesquita, Francisco Couto, Where GO is going and what it means for ontology extension.International Conference on Biomedical Ontologies 2011.
Document | BibTeX source
Bruno Tavares, Hugo Bastos, Daniel Faria, Joao D. Ferreira, Tiago Grego, Catia Pesquita, Francisco Couto, The Biomedical Ontology Applications (BOA) framework.Proceedings of ICBO 2011.
Bruno Tavares, Hugo Bastos, Daniel Faria, Joao D. Ferreira, Tiago Grego, Catia Pesquita, Francisco Couto, The Biomedical Ontology Applications (BOA) framework.Proceedings of ICBO 2011.
Document | BibTeX source
Hugo Bastos, Bruno Tavares, Catia Pesquita, Daniel Faria, Francisco Couto: Application of Gene Ontology to Gene Identification. In Silico Tools for Gene Discovery: Methods in Molecular Biology. Springer, 2011.
Hugo Bastos, Bruno Tavares, Catia Pesquita, Daniel Faria, Francisco Couto: Application of Gene Ontology to Gene Identification. In Silico Tools for Gene Discovery: Methods in Molecular Biology. Springer, 2011.
BibTeX source
Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco Couto, BLOOMS on AgreementMaker: results for OAEI 2010.ISWC Workshop on Ontology Matching 2010.
Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco Couto, BLOOMS on AgreementMaker: results for OAEI 2010.ISWC Workshop on Ontology Matching 2010.
BibTeX source
Patricia Gomes-Alves, Francisco Couto, Catia Pesquita, AV Coelho, Deborah Penque 2010: Rescue of F508del-CFTR by RXR motif inactivation triggers proteome modulation associated with the unfolded protein response. Biochimica et Biophysica Acta (BBA)-Proteins % Proteomics 4(1804), 856-865.
Patricia Gomes-Alves, Francisco Couto, Catia Pesquita, AV Coelho, Deborah Penque 2010: Rescue of F508del-CFTR by RXR motif inactivation triggers proteome modulation associated with the unfolded protein response. Biochimica et Biophysica Acta (BBA)-Proteins % Proteomics 4(1804), 856-865.
Document | BibTeX source
Daniel Faria, Catia Pesquita, Francisco Couto, Andre O Falcao, GOclasses: molecular function as viewed by proteins.BioOntologies SIG at ISMB/ECCB - 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2009.
Daniel Faria, Catia Pesquita, Francisco Couto, Andre O Falcao, GOclasses: molecular function as viewed by proteins.BioOntologies SIG at ISMB/ECCB - 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2009.
URL | BibTeX source
Tiago Grego, João D. Ferreira, Catia Pesquita, Hugo Bastos, Diogo Vila Viçosa, João Freire, Francisco Couto, Chemical and Metabolic Pathway Semantic Similarity Technical Report. TR 2010-01. University of Lisbon, Faculty of Sciences, LASIGE, March 2010.
Tiago Grego, João D. Ferreira, Catia Pesquita, Hugo Bastos, Diogo Vila Viçosa, João Freire, Francisco Couto, Chemical and Metabolic Pathway Semantic Similarity Technical Report. TR 2010-01. University of Lisbon, Faculty of Sciences, LASIGE, March 2010.
BibTeX source
Catia Pesquita, Francisco Couto, Taking GO where we need it to go: focused automated enrichment of the Gene Ontology.Student Council Symposium at ISMB/ECCB 2009. Stockholm, Sweden 2009.
Catia Pesquita, Francisco Couto, Taking GO where we need it to go: focused automated enrichment of the Gene Ontology.Student Council Symposium at ISMB/ECCB 2009. Stockholm, Sweden 2009.
Poster | BibTeX source
Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, Collaborative Evaluation of GO-based Similarity Measures.The 12th Annual Bio-Ontologies Meeting at ISMB/ECCB 2009 2009.
Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, Collaborative Evaluation of GO-based Similarity Measures.The 12th Annual Bio-Ontologies Meeting at ISMB/ECCB 2009 2009.
Document | BibTeX source
Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, CESSM : Collaborative Evaluation of Semantic Similarity Measures.JB2009: Challenges in Bioinformatics November, 2009.
Catia Pesquita, Delphine Pessoa, Daniel Faria, Francisco Couto, CESSM : Collaborative Evaluation of Semantic Similarity Measures.JB2009: Challenges in Bioinformatics November, 2009.
DOI | URL | BibTeX source
Catia Pesquita, Daniel Faria, Andre O Falcao, Philip Lord, Francisco Couto 2009: Semantic Similarity in Biomedical Ontologies. PLoS Computational Biology.
Catia Pesquita, Daniel Faria, Andre O Falcao, Philip Lord, Francisco Couto 2009: Semantic Similarity in Biomedical Ontologies. PLoS Computational Biology.
URL | Document | BibTeX source
Francisco Couto, Catia Pesquita, Tiago Grego, Paulo Verissimo 2009: Handling self-citations using Google Scholar. Cybermetrics: International Journal of Scientometrics, Informetrics and Bibliometrics.
Francisco Couto, Catia Pesquita, Tiago Grego, Paulo Verissimo 2009: Handling self-citations using Google Scholar. Cybermetrics: International Journal of Scientometrics, Informetrics and Bibliometrics.
Document | BibTeX source
Catia Pesquita, Tiago Grego, Francisco Couto 2009: Identifying Gene Ontology Areas for Automated Enrichment. Lecture Notes in Computer Science (5518), 934-941.
Catia Pesquita, Tiago Grego, Francisco Couto 2009: Identifying Gene Ontology Areas for Automated Enrichment. Lecture Notes in Computer Science (5518), 934-941.
BibTeX source
I.W. Taylor, R. Linding, D. Warde-Farley, Y. Liu, Catia Pesquita, Daniel Faria, S. Bull, T. Pawson, Q. Morris, J.L. Wrana 2009: Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nature Biotechnology 27(), 199-204.
I.W. Taylor, R. Linding, D. Warde-Farley, Y. Liu, Catia Pesquita, Daniel Faria, S. Bull, T. Pawson, Q. Morris, J.L. Wrana 2009: Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nature Biotechnology 27(), 199-204.
Document | BibTeX source
Catia Pesquita, Daniel Faria, Rui Lopes, Francisco Couto, Measuring coherence between electronic and manual annotations in biological databases.SAC '09: Proceedings of the 2009 ACM Symposium on Applied Computing 2009. ACM.
Catia Pesquita, Daniel Faria, Rui Lopes, Francisco Couto, Measuring coherence between electronic and manual annotations in biological databases.SAC '09: Proceedings of the 2009 ACM Symposium on Applied Computing 2009. ACM.
Poster | BibTeX source
Catia Pesquita, Francisco Couto, Mario Silva, Automated Enrichment of BioOntologies.First Portuguese Forum on Computational Biology (as a poster) IGC, 2008.
Catia Pesquita, Francisco Couto, Mario Silva, Automated Enrichment of BioOntologies.First Portuguese Forum on Computational Biology (as a poster) IGC, 2008.
DOI | Document | Presentation | BibTeX source
Francisco Couto, Tiago Grego, Catia Pesquita, Hugo Bastos, R. Torres, P. Sanchez, L. Pascual, C. Blaschke, Identifying Bioentity Recognition Errors of Rule-Based Text-Mining Systems.IEEE Third International Conference on Digital Information Management (ICDIM) 2008.
Francisco Couto, Tiago Grego, Catia Pesquita, Hugo Bastos, R. Torres, P. Sanchez, L. Pascual, C. Blaschke, Identifying Bioentity Recognition Errors of Rule-Based Text-Mining Systems.IEEE Third International Conference on Digital Information Management (ICDIM) 2008.
DOI | URL | BibTeX source
Catia Pesquita, Daniel Faria, Hugo Bastos, António Ferreira, Andre O Falcao, Francisco Couto 2008: Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinformatics Suppl 5(9), S4.
Catia Pesquita, Daniel Faria, Hugo Bastos, António Ferreira, Andre O Falcao, Francisco Couto 2008: Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinformatics Suppl 5(9), S4.
DOI | URL | BibTeX source
Hugo Bastos, Daniel Faria, Catia Pesquita, Andre O. Falcao, BOLOS: BLAST Ontology-Linked hOmologue Stars.SAC '08: Proceedings of the 2008 ACM symposium on Applied computing New York, NY, USA, March, 2008. ACM.
Hugo Bastos, Daniel Faria, Catia Pesquita, Andre O. Falcao, BOLOS: BLAST Ontology-Linked hOmologue Stars.SAC '08: Proceedings of the 2008 ACM symposium on Applied computing New York, NY, USA, March, 2008. ACM.
URL | Document | BibTeX source
Catia Pesquita, Daniel Faria, Tiago Grego, Francisco Couto, Mário J. Silva: Untangling BioOntologies for Mining Biomedical Information. in: Handbook of Research on Text and Web Mining Technologies. Idea Group Inc. 2008.
Catia Pesquita, Daniel Faria, Tiago Grego, Francisco Couto, Mário J. Silva: Untangling BioOntologies for Mining Biomedical Information. in: Handbook of Research on Text and Web Mining Technologies. Idea Group Inc. 2008.
Document | BibTeX source
Catia Pesquita, Improving semantic similarity for proteins based on the Gene Ontology Master Thesis, University of Lisbon, Faculty of Sciences, December 2007.
Catia Pesquita, Improving semantic similarity for proteins based on the Gene Ontology Master Thesis, University of Lisbon, Faculty of Sciences, December 2007.
BibTeX source
Hugo Bastos, Daniel Faria, Catia Pesquita, Andre O. Falcao, Using GO terms to evaluate protein clustering.BioOntologies SIG at ISMB/ECCB - 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2007.
Hugo Bastos, Daniel Faria, Catia Pesquita, Andre O. Falcao, Using GO terms to evaluate protein clustering.BioOntologies SIG at ISMB/ECCB - 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2007.
Document | BibTeX source
Catia Pesquita, Daniel Faria, Hugo Bastos, Andre O. Falcao, Francisco Couto, Evaluating GO-based Semantic Similarity Measures.BioOntologies SIG at ISMB/ECCB - 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2007.
Catia Pesquita, Daniel Faria, Hugo Bastos, Andre O. Falcao, Francisco Couto, Evaluating GO-based Semantic Similarity Measures.BioOntologies SIG at ISMB/ECCB - 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) July, 2007.
